Strain Fitness in Variovorax sp. SCN45 around GFF5460

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5459 and GFF5460 overlap by 4 nucleotidesGFF5460 and GFF5461 are separated by 12 nucleotidesGFF5461 and GFF5462 overlap by 4 nucleotides GFF5459 - 3-oxo-tetronate kinase, at 89,819 to 91,090 GFF5459 GFF5460 - 3-oxo-tetronate 4-phosphate decarboxylase, at 91,087 to 91,752 GFF5460 GFF5461 - 2-dehydrotetronate isomerase (EC 5.3.1.35), at 91,765 to 92,583 GFF5461 GFF5462 - Cytosine deaminase (EC 3.5.4.1), at 92,580 to 93,776 GFF5462 Position (kb) 91 92Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 90.163 kb on + strand, within GFF5459at 90.164 kb on - strand, within GFF5459at 90.164 kb on - strand, within GFF5459at 90.206 kb on + strand, within GFF5459at 90.206 kb on + strand, within GFF5459at 90.207 kb on - strand, within GFF5459at 90.207 kb on - strand, within GFF5459at 90.207 kb on - strand, within GFF5459at 90.207 kb on - strand, within GFF5459at 90.336 kb on - strand, within GFF5459at 90.753 kb on - strand, within GFF5459at 91.075 kb on + strandat 91.075 kb on + strandat 91.075 kb on + strandat 91.075 kb on + strandat 91.075 kb on + strandat 91.075 kb on + strandat 91.075 kb on + strandat 91.075 kb on + strandat 91.075 kb on + strandat 91.075 kb on + strandat 91.076 kb on - strandat 91.076 kb on - strandat 91.076 kb on - strandat 91.076 kb on - strandat 91.150 kb on + strandat 91.151 kb on - strandat 91.313 kb on + strand, within GFF5460at 91.327 kb on + strand, within GFF5460at 91.328 kb on - strand, within GFF5460at 91.447 kb on + strand, within GFF5460at 91.447 kb on + strand, within GFF5460at 91.447 kb on + strand, within GFF5460at 91.448 kb on - strand, within GFF5460at 91.753 kb on + strandat 91.753 kb on + strandat 91.754 kb on - strandat 91.754 kb on - strandat 91.864 kb on + strand, within GFF5461at 91.864 kb on + strand, within GFF5461at 91.864 kb on + strand, within GFF5461at 91.864 kb on + strand, within GFF5461at 91.865 kb on - strand, within GFF5461at 91.865 kb on - strand, within GFF5461at 91.865 kb on - strand, within GFF5461at 91.876 kb on + strand, within GFF5461at 92.128 kb on + strand, within GFF5461at 92.128 kb on + strand, within GFF5461at 92.128 kb on + strand, within GFF5461at 92.128 kb on + strand, within GFF5461at 92.129 kb on - strand, within GFF5461at 92.129 kb on - strand, within GFF5461at 92.129 kb on - strand, within GFF5461at 92.183 kb on + strand, within GFF5461at 92.184 kb on - strand, within GFF5461at 92.184 kb on - strand, within GFF5461at 92.302 kb on + strand, within GFF5461at 92.302 kb on + strand, within GFF5461at 92.302 kb on + strand, within GFF5461at 92.303 kb on - strand, within GFF5461at 92.303 kb on - strand, within GFF5461at 92.303 kb on - strand, within GFF5461at 92.339 kb on - strand, within GFF5461at 92.350 kb on + strand, within GFF5461at 92.350 kb on + strand, within GFF5461at 92.351 kb on - strand, within GFF5461at 92.351 kb on - strand, within GFF5461at 92.431 kb on + strand, within GFF5461at 92.431 kb on + strand, within GFF5461at 92.431 kb on + strand, within GFF5461at 92.431 kb on + strand, within GFF5461at 92.431 kb on + strand, within GFF5461at 92.431 kb on + strand, within GFF5461at 92.431 kb on + strand, within GFF5461at 92.431 kb on + strand, within GFF5461at 92.432 kb on - strand, within GFF5461at 92.432 kb on - strand, within GFF5461at 92.432 kb on - strand, within GFF5461at 92.432 kb on - strand, within GFF5461at 92.432 kb on - strand, within GFF5461at 92.432 kb on - strand, within GFF5461at 92.432 kb on - strand, within GFF5461at 92.437 kb on + strand, within GFF5461at 92.437 kb on + strand, within GFF5461at 92.437 kb on + strand, within GFF5461at 92.437 kb on + strand, within GFF5461at 92.437 kb on + strand, within GFF5461at 92.437 kb on + strand, within GFF5461at 92.438 kb on - strand, within GFF5461at 92.438 kb on - strand, within GFF5461at 92.503 kb on + strandat 92.503 kb on + strandat 92.737 kb on + strand, within GFF5462at 92.737 kb on + strand, within GFF5462at 92.737 kb on + strand, within GFF5462at 92.738 kb on - strand, within GFF5462

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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90,163 + GFF5459 0.27 -2.1
90,164 - GFF5459 0.27 -0.2
90,164 - GFF5459 0.27 +1.2
90,206 + GFF5459 0.30 -0.2
90,206 + GFF5459 0.30 +0.2
90,207 - GFF5459 0.31 -0.3
90,207 - GFF5459 0.31 +0.6
90,207 - GFF5459 0.31 +1.4
90,207 - GFF5459 0.31 -0.3
90,336 - GFF5459 0.41 +1.8
90,753 - GFF5459 0.73 -0.9
91,075 + -1.6
91,075 + -0.7
91,075 + +0.5
91,075 + -0.0
91,075 + -2.0
91,075 + +0.4
91,075 + -0.5
91,075 + -1.7
91,075 + -0.0
91,075 + -0.0
91,076 - -0.8
91,076 - -0.5
91,076 - -1.2
91,076 - -0.1
91,150 + +0.2
91,151 - +0.4
91,313 + GFF5460 0.34 +0.3
91,327 + GFF5460 0.36 +0.1
91,328 - GFF5460 0.36 -1.5
91,447 + GFF5460 0.54 +0.6
91,447 + GFF5460 0.54 +0.6
91,447 + GFF5460 0.54 +0.0
91,448 - GFF5460 0.54 -0.2
91,753 + +0.4
91,753 + -0.2
91,754 - +0.2
91,754 - -0.6
91,864 + GFF5461 0.12 -0.1
91,864 + GFF5461 0.12 -0.7
91,864 + GFF5461 0.12 -0.4
91,864 + GFF5461 0.12 -0.4
91,865 - GFF5461 0.12 +0.3
91,865 - GFF5461 0.12 +0.1
91,865 - GFF5461 0.12 -0.3
91,876 + GFF5461 0.14 +0.1
92,128 + GFF5461 0.44 +0.6
92,128 + GFF5461 0.44 -2.0
92,128 + GFF5461 0.44 -0.3
92,128 + GFF5461 0.44 +0.3
92,129 - GFF5461 0.44 -0.3
92,129 - GFF5461 0.44 +0.2
92,129 - GFF5461 0.44 +3.4
92,183 + GFF5461 0.51 -0.2
92,184 - GFF5461 0.51 +0.8
92,184 - GFF5461 0.51 +0.3
92,302 + GFF5461 0.66 -0.4
92,302 + GFF5461 0.66 -0.4
92,302 + GFF5461 0.66 +0.4
92,303 - GFF5461 0.66 -0.2
92,303 - GFF5461 0.66 -0.0
92,303 - GFF5461 0.66 -0.7
92,339 - GFF5461 0.70 -0.3
92,350 + GFF5461 0.71 -0.4
92,350 + GFF5461 0.71 -0.4
92,351 - GFF5461 0.72 -3.3
92,351 - GFF5461 0.72 -1.3
92,431 + GFF5461 0.81 -0.5
92,431 + GFF5461 0.81 -0.0
92,431 + GFF5461 0.81 +1.0
92,431 + GFF5461 0.81 -0.3
92,431 + GFF5461 0.81 -0.2
92,431 + GFF5461 0.81 -0.2
92,431 + GFF5461 0.81 -0.3
92,431 + GFF5461 0.81 -0.1
92,432 - GFF5461 0.81 +0.2
92,432 - GFF5461 0.81 +0.0
92,432 - GFF5461 0.81 -1.0
92,432 - GFF5461 0.81 +0.6
92,432 - GFF5461 0.81 +0.3
92,432 - GFF5461 0.81 +1.1
92,432 - GFF5461 0.81 +0.0
92,437 + GFF5461 0.82 -1.0
92,437 + GFF5461 0.82 +0.5
92,437 + GFF5461 0.82 +0.8
92,437 + GFF5461 0.82 -0.3
92,437 + GFF5461 0.82 +1.8
92,437 + GFF5461 0.82 -0.7
92,438 - GFF5461 0.82 -0.4
92,438 - GFF5461 0.82 +0.3
92,503 + -0.0
92,503 + -3.1
92,737 + GFF5462 0.13 -2.1
92,737 + GFF5462 0.13 +0.6
92,737 + GFF5462 0.13 +0.8
92,738 - GFF5462 0.13 +1.3

Or see this region's nucleotide sequence