Strain Fitness in Variovorax sp. SCN45 around GFF5169

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
20,480	+				-0.0
20,480	+				+0.6
20,481	-				+0.7
20,492	+				-1.0
20,492	+				-0.0
20,546	+				-2.0
20,546	+				+0.6
20,546	+				-0.8
20,546	+				+1.2
20,546	+				+1.0
20,546	+				-1.2
20,546	+				+0.5
20,547	-				-0.5
20,547	-				-0.4
20,547	-				-0.9
20,547	-				-0.9
20,547	-				-0.2
20,547	-				-1.6
20,547	-				-0.9
20,596	+				-0.8
20,596	+				-0.0
20,596	+				-1.2
20,596	+				-0.3
20,596	+				-0.5
20,596	+				+1.5
20,596	+				-0.2
20,596	+				-1.3
20,596	+				+0.2
20,596	+				-0.7
20,596	+				-0.1
20,596	+				-1.3
20,597	-				-0.4
20,597	-				+0.5
20,597	-				-0.7
20,597	-				-1.3
20,598	+				-0.6
20,598	+				-0.5
20,598	+				+0.1
20,598	+				+0.7
20,598	+				-0.3
20,598	+				-0.9
20,598	+				-0.5
20,598	+				+0.2
20,599	-				-0.9
20,599	-				-2.4
20,599	-				-0.5
20,599	-				-1.1
20,599	-				-1.0
20,599	-				+1.1
20,599	-				-2.4
20,622	+				+0.0
20,622	+				-0.7
20,623	-				+0.1
20,623	-				-0.4
20,623	-				+0.0
20,817	+		GFF5168	0.27	+1.3
20,817	+		GFF5168	0.27	-0.9
20,817	+		GFF5168	0.27	-0.3
20,817	+		GFF5168	0.27	-2.7
20,818	-		GFF5168	0.27	-0.3
20,818	-		GFF5168	0.27	-0.0
20,838	+		GFF5168	0.30	+2.4
20,838	+		GFF5168	0.30	-0.2
20,838	+		GFF5168	0.30	+1.7
20,839	-		GFF5168	0.30	-1.0
20,839	-		GFF5168	0.30	-0.2
20,839	-		GFF5168	0.30	-0.6
20,839	-		GFF5168	0.30	-0.9
20,839	-		GFF5168	0.30	-0.6
20,839	-		GFF5168	0.30	-0.2
21,024	+		GFF5168	0.54	-0.8
21,024	+		GFF5168	0.54	+0.2
21,025	-		GFF5168	0.54	+0.3
21,025	-		GFF5168	0.54	-0.1
21,025	-		GFF5168	0.54	+0.5
21,025	-		GFF5168	0.54	+1.0
21,025	-		GFF5168	0.54	-0.3
21,135	+		GFF5168	0.68	+0.1
21,136	-		GFF5168	0.69	+0.7
21,276	+		GFF5168	0.87	-0.2
21,276	+		GFF5168	0.87	-0.6
21,276	+		GFF5168	0.87	-0.1
21,276	+		GFF5168	0.87	+0.3
21,276	+		GFF5168	0.87	-0.5
21,276	+		GFF5168	0.87	+0.3
21,276	+		GFF5168	0.87	-1.0
21,276	+		GFF5168	0.87	-0.5
21,277	-		GFF5168	0.87	-0.5
21,277	-		GFF5168	0.87	-0.2
21,277	-		GFF5168	0.87	+0.1
21,277	-		GFF5168	0.87	+0.4
21,277	-		GFF5168	0.87	-0.8
21,277	-		GFF5168	0.87	+1.7
21,430	+				+0.3
21,430	+				-0.9
21,430	+				-0.4
21,430	+				-1.1
21,430	+				-1.1
21,430	+				-0.0
21,431	-				+0.2
21,431	-				+0.1
21,431	-				+0.0
21,431	-				-0.6
21,431	-				-0.5
21,431	-				-0.4
21,431	-				+0.2
21,431	-				+0.7
21,431	-				-0.1
21,431	-				+0.1
21,431	-				-0.3
21,575	+		GFF5169	0.21	-0.7
21,576	-		GFF5169	0.21	-0.8
21,576	-		GFF5169	0.21	-0.2
21,577	+		GFF5169	0.22	+0.0
21,577	+		GFF5169	0.22	+0.1
21,577	+		GFF5169	0.22	+0.1
21,577	+		GFF5169	0.22	+0.3
21,577	+		GFF5169	0.22	-0.2
21,577	+		GFF5169	0.22	+0.2
21,577	+		GFF5169	0.22	-1.9
21,577	+		GFF5169	0.22	+4.3
21,577	+		GFF5169	0.22	-0.8
21,577	+		GFF5169	0.22	+0.2
21,577	+		GFF5169	0.22	-0.4
21,577	+		GFF5169	0.22	-1.8
21,577	+		GFF5169	0.22	-0.0
21,577	+		GFF5169	0.22	-1.1
21,577	+		GFF5169	0.22	+0.4
21,577	+		GFF5169	0.22	+0.3
21,577	+		GFF5169	0.22	-0.2
21,577	+		GFF5169	0.22	+0.6
21,578	-		GFF5169	0.22	-0.9
21,578	-		GFF5169	0.22	+0.4
21,578	-		GFF5169	0.22	-0.3
21,578	-		GFF5169	0.22	-0.9
21,578	-		GFF5169	0.22	-1.7
21,578	-		GFF5169	0.22	+0.1
21,578	-		GFF5169	0.22	-2.0
21,578	-		GFF5169	0.22	-0.4
21,578	-		GFF5169	0.22	-1.8
21,578	-		GFF5169	0.22	+0.1
21,578	-		GFF5169	0.22	+0.4
21,578	-		GFF5169	0.22	+0.3
21,578	-		GFF5169	0.22	-0.9
21,578	-		GFF5169	0.22	-0.9
21,578	-		GFF5169	0.22	-0.5
21,578	-		GFF5169	0.22	-0.9
21,757	+		GFF5169	0.43	-0.4
21,757	+		GFF5169	0.43	-0.2
21,757	+		GFF5169	0.43	-0.7
21,757	+		GFF5169	0.43	+0.2
21,758	-		GFF5169	0.43	-0.3
21,758	-		GFF5169	0.43	+1.3
21,758	-		GFF5169	0.43	+1.9
21,790	+		GFF5169	0.46	+0.2
21,790	+		GFF5169	0.46	-0.3
21,790	+		GFF5169	0.46	+0.1
21,790	+		GFF5169	0.46	+0.0
21,791	-		GFF5169	0.47	-0.6
21,842	-		GFF5169	0.53	-0.5
21,862	+		GFF5169	0.55	-0.2
21,862	+		GFF5169	0.55	-0.9
21,862	+		GFF5169	0.55	-0.6
21,862	+		GFF5169	0.55	-0.3
21,862	+		GFF5169	0.55	-0.3
21,862	+		GFF5169	0.55	+0.3
21,862	+		GFF5169	0.55	-0.1
21,863	-		GFF5169	0.55	+0.6
21,863	-		GFF5169	0.55	-1.8
21,863	-		GFF5169	0.55	+1.1
21,863	-		GFF5169	0.55	-0.5
22,135	+		GFF5169	0.87	-0.3
22,135	+		GFF5169	0.87	+1.7
22,136	-		GFF5169	0.87	-0.7
22,153	+		GFF5169	0.89	-0.6
22,153	+		GFF5169	0.89	-0.7
22,153	+		GFF5169	0.89	+0.3
22,153	+		GFF5169	0.89	-1.4
22,153	+		GFF5169	0.89	-0.2
22,153	+		GFF5169	0.89	+1.0
22,153	+		GFF5169	0.89	-0.3
22,153	+		GFF5169	0.89	-0.9
22,153	+		GFF5169	0.89	-0.4
22,153	+		GFF5169	0.89	+0.5
22,153	+		GFF5169	0.89	-0.6
22,153	+		GFF5169	0.89	-0.4
22,153	+		GFF5169	0.89	-0.3
22,153	+		GFF5169	0.89	-1.6
22,153	+		GFF5169	0.89	-0.7
22,153	+		GFF5169	0.89	-0.2
22,153	+		GFF5169	0.89	-0.9
22,154	-		GFF5169	0.89	-0.3
22,154	-		GFF5169	0.89	-0.3
22,154	-		GFF5169	0.89	-1.1
22,154	-		GFF5169	0.89	-0.2
22,154	-		GFF5169	0.89	-0.2
22,154	-		GFF5169	0.89	+1.2
22,154	-		GFF5169	0.89	-0.7
22,154	-		GFF5169	0.89	+0.1
22,177	+				+0.2
22,177	+				-0.7
22,177	+				+0.5
22,177	+				+0.1
22,177	+				-0.3
22,177	+				+0.7
22,178	-				-0.2
22,178	-				-0.2
22,178	-				+0.1
22,178	-				-0.4
22,178	-				+0.4