Strain Fitness in Variovorax sp. SCN45 around GFF5088

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5087 and GFF5088 are separated by 31 nucleotidesGFF5088 and GFF5089 are separated by 107 nucleotidesGFF5089 and GFF5090 are separated by 145 nucleotides GFF5087 - DNA repair protein RadA, at 190,533 to 191,927 GFF5087 GFF5088 - hypothetical protein, at 191,959 to 192,978 GFF5088 GFF5089 - Transcriptional regulator, MarR family, at 193,086 to 193,592 GFF5089 GFF5090 - Homoprotocatechuate degradative operon repressor, at 193,738 to 194,175 GFF5090 Position (kb) 191 192 193Strain fitness (log2 ratio) -1 0 1 2at 191.200 kb on + strand, within GFF5087at 191.200 kb on + strand, within GFF5087at 191.201 kb on - strand, within GFF5087at 191.201 kb on - strand, within GFF5087at 191.201 kb on - strand, within GFF5087at 191.201 kb on - strand, within GFF5087at 191.201 kb on - strand, within GFF5087at 191.377 kb on + strand, within GFF5087at 191.377 kb on + strand, within GFF5087at 191.378 kb on - strand, within GFF5087at 191.378 kb on - strand, within GFF5087at 191.378 kb on - strand, within GFF5087at 191.472 kb on + strand, within GFF5087at 191.472 kb on + strand, within GFF5087at 191.473 kb on - strand, within GFF5087at 191.545 kb on + strand, within GFF5087at 191.545 kb on + strand, within GFF5087at 191.545 kb on + strand, within GFF5087at 191.545 kb on + strand, within GFF5087at 191.545 kb on + strand, within GFF5087at 191.546 kb on - strand, within GFF5087at 191.546 kb on - strand, within GFF5087at 191.546 kb on - strand, within GFF5087at 191.546 kb on - strand, within GFF5087at 191.546 kb on - strand, within GFF5087at 191.938 kb on + strandat 191.938 kb on + strandat 191.938 kb on + strandat 191.939 kb on - strandat 192.062 kb on + strand, within GFF5088at 192.062 kb on + strand, within GFF5088at 192.063 kb on - strand, within GFF5088at 192.170 kb on + strand, within GFF5088at 192.170 kb on + strand, within GFF5088at 192.170 kb on + strand, within GFF5088at 192.170 kb on + strand, within GFF5088at 192.171 kb on - strand, within GFF5088at 192.171 kb on - strand, within GFF5088at 192.225 kb on + strand, within GFF5088at 192.225 kb on + strand, within GFF5088at 192.225 kb on + strand, within GFF5088at 192.225 kb on + strand, within GFF5088at 192.226 kb on - strand, within GFF5088at 192.329 kb on + strand, within GFF5088at 192.329 kb on + strand, within GFF5088at 192.329 kb on + strand, within GFF5088at 192.461 kb on + strand, within GFF5088at 192.462 kb on - strand, within GFF5088at 192.608 kb on + strand, within GFF5088at 192.608 kb on + strand, within GFF5088at 192.608 kb on + strand, within GFF5088at 192.609 kb on - strand, within GFF5088at 192.609 kb on - strand, within GFF5088at 192.609 kb on - strand, within GFF5088at 192.609 kb on - strand, within GFF5088at 192.609 kb on - strand, within GFF5088at 192.954 kb on - strandat 192.954 kb on - strandat 193.036 kb on - strandat 193.036 kb on - strandat 193.036 kb on - strandat 193.036 kb on - strandat 193.036 kb on - strandat 193.036 kb on - strandat 193.036 kb on - strandat 193.036 kb on - strandat 193.085 kb on + strandat 193.085 kb on + strandat 193.085 kb on + strandat 193.086 kb on - strandat 193.086 kb on - strandat 193.086 kb on - strandat 193.093 kb on + strandat 193.094 kb on - strandat 193.094 kb on - strandat 193.094 kb on - strandat 193.094 kb on - strandat 193.125 kb on + strandat 193.126 kb on - strandat 193.649 kb on - strandat 193.649 kb on - strandat 193.649 kb on - strandat 193.649 kb on - strandat 193.649 kb on - strandat 193.649 kb on - strandat 193.650 kb on - strandat 193.653 kb on + strandat 193.653 kb on + strandat 193.653 kb on + strandat 193.653 kb on + strandat 193.682 kb on + strandat 193.682 kb on + strandat 193.683 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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191,200 + GFF5087 0.48 -0.0
191,200 + GFF5087 0.48 -0.6
191,201 - GFF5087 0.48 -0.5
191,201 - GFF5087 0.48 -0.8
191,201 - GFF5087 0.48 -0.1
191,201 - GFF5087 0.48 -0.3
191,201 - GFF5087 0.48 -0.6
191,377 + GFF5087 0.61 -0.1
191,377 + GFF5087 0.61 -1.1
191,378 - GFF5087 0.61 +0.3
191,378 - GFF5087 0.61 -0.2
191,378 - GFF5087 0.61 +0.8
191,472 + GFF5087 0.67 -0.3
191,472 + GFF5087 0.67 +0.1
191,473 - GFF5087 0.67 +0.3
191,545 + GFF5087 0.73 -0.8
191,545 + GFF5087 0.73 -0.1
191,545 + GFF5087 0.73 -1.4
191,545 + GFF5087 0.73 -0.1
191,545 + GFF5087 0.73 -0.9
191,546 - GFF5087 0.73 +0.8
191,546 - GFF5087 0.73 +0.3
191,546 - GFF5087 0.73 +0.3
191,546 - GFF5087 0.73 -1.4
191,546 - GFF5087 0.73 -0.5
191,938 + -0.6
191,938 + +0.2
191,938 + -1.1
191,939 - +0.2
192,062 + GFF5088 0.10 -0.5
192,062 + GFF5088 0.10 -0.4
192,063 - GFF5088 0.10 -0.1
192,170 + GFF5088 0.21 +1.8
192,170 + GFF5088 0.21 -0.8
192,170 + GFF5088 0.21 -0.1
192,170 + GFF5088 0.21 +1.5
192,171 - GFF5088 0.21 -0.4
192,171 - GFF5088 0.21 +0.1
192,225 + GFF5088 0.26 -0.1
192,225 + GFF5088 0.26 +0.2
192,225 + GFF5088 0.26 -0.2
192,225 + GFF5088 0.26 -0.3
192,226 - GFF5088 0.26 +1.3
192,329 + GFF5088 0.36 -0.1
192,329 + GFF5088 0.36 +0.2
192,329 + GFF5088 0.36 +0.2
192,461 + GFF5088 0.49 +0.0
192,462 - GFF5088 0.49 +0.1
192,608 + GFF5088 0.64 -0.4
192,608 + GFF5088 0.64 -0.0
192,608 + GFF5088 0.64 -1.1
192,609 - GFF5088 0.64 +0.8
192,609 - GFF5088 0.64 -0.5
192,609 - GFF5088 0.64 +0.0
192,609 - GFF5088 0.64 -0.2
192,609 - GFF5088 0.64 -0.2
192,954 - -0.5
192,954 - -1.4
193,036 - -0.6
193,036 - -0.5
193,036 - -0.1
193,036 - -0.3
193,036 - -1.0
193,036 - +1.2
193,036 - +0.6
193,036 - -0.8
193,085 + +0.8
193,085 + +0.3
193,085 + -0.7
193,086 - -0.5
193,086 - +0.2
193,086 - +0.6
193,093 + -0.4
193,094 - +0.6
193,094 - +0.1
193,094 - -0.2
193,094 - -0.9
193,125 + +0.2
193,126 - -0.5
193,649 - +0.4
193,649 - -0.2
193,649 - -0.6
193,649 - -0.1
193,649 - +1.8
193,649 - +0.9
193,650 - +0.3
193,653 + -0.6
193,653 + -0.9
193,653 + +0.5
193,653 + +0.1
193,682 + +0.1
193,682 + +0.9
193,683 - +0.0

Or see this region's nucleotide sequence