Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5062 and GFF5063 are separated by 1 nucleotides GFF5063 and GFF5064 are separated by 39 nucleotides GFF5064 and GFF5065 are separated by 12 nucleotides
GFF5062 - Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7), at 163,657 to 165,171
GFF5062
GFF5063 - Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7), at 165,173 to 166,663
GFF5063
GFF5064 - Exonuclease SbcC, at 166,703 to 167,392
GFF5064
GFF5065 - Orotate phosphoribosyltransferase (EC 2.4.2.10), at 167,405 to 168,088
GFF5065
Position (kb) 165
166
167 Strain fitness (log2 ratio) -1
0
1 at 166.896 kb on + strand, within GFF5064 at 166.896 kb on + strand, within GFF5064 at 166.896 kb on + strand, within GFF5064 at 166.896 kb on + strand, within GFF5064 at 166.896 kb on + strand, within GFF5064 at 166.896 kb on + strand, within GFF5064 at 166.896 kb on + strand, within GFF5064 at 166.896 kb on + strand, within GFF5064 at 166.896 kb on + strand, within GFF5064 at 166.896 kb on + strand, within GFF5064 at 166.896 kb on + strand, within GFF5064 at 166.896 kb on + strand, within GFF5064 at 166.897 kb on - strand, within GFF5064 at 166.897 kb on - strand, within GFF5064 at 166.897 kb on - strand, within GFF5064 at 166.897 kb on - strand, within GFF5064 at 166.897 kb on - strand, within GFF5064 at 166.897 kb on - strand, within GFF5064 at 166.897 kb on - strand, within GFF5064 at 166.897 kb on - strand, within GFF5064 at 166.897 kb on - strand, within GFF5064 at 166.897 kb on - strand, within GFF5064 at 166.897 kb on - strand, within GFF5064 at 167.139 kb on + strand, within GFF5064 at 167.139 kb on + strand, within GFF5064 at 167.139 kb on + strand, within GFF5064 at 167.139 kb on + strand, within GFF5064 at 167.140 kb on - strand, within GFF5064 at 167.140 kb on - strand, within GFF5064 at 167.336 kb on + strand at 167.336 kb on + strand at 167.337 kb on - strand at 167.399 kb on + strand at 167.399 kb on + strand at 167.399 kb on + strand at 167.399 kb on + strand at 167.400 kb on - strand at 167.400 kb on - strand at 167.400 kb on - strand at 167.400 kb on - strand at 167.430 kb on + strand at 167.487 kb on + strand, within GFF5065 at 167.487 kb on + strand, within GFF5065 at 167.550 kb on + strand, within GFF5065 at 167.550 kb on + strand, within GFF5065 at 167.551 kb on - strand, within GFF5065
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 166,896 + GFF5064 0.28 +1.2 166,896 + GFF5064 0.28 -0.8 166,896 + GFF5064 0.28 +0.3 166,896 + GFF5064 0.28 -0.1 166,896 + GFF5064 0.28 +0.3 166,896 + GFF5064 0.28 +0.9 166,896 + GFF5064 0.28 -0.5 166,896 + GFF5064 0.28 +0.5 166,896 + GFF5064 0.28 +0.8 166,896 + GFF5064 0.28 +0.6 166,896 + GFF5064 0.28 -0.2 166,896 + GFF5064 0.28 +0.1 166,897 - GFF5064 0.28 +0.6 166,897 - GFF5064 0.28 +0.6 166,897 - GFF5064 0.28 +0.4 166,897 - GFF5064 0.28 +0.2 166,897 - GFF5064 0.28 -0.4 166,897 - GFF5064 0.28 +1.0 166,897 - GFF5064 0.28 +0.2 166,897 - GFF5064 0.28 +0.8 166,897 - GFF5064 0.28 +1.2 166,897 - GFF5064 0.28 +0.7 166,897 - GFF5064 0.28 +0.4 167,139 + GFF5064 0.63 +0.2 167,139 + GFF5064 0.63 -0.1 167,139 + GFF5064 0.63 +0.3 167,139 + GFF5064 0.63 +1.2 167,140 - GFF5064 0.63 -0.0 167,140 - GFF5064 0.63 +1.2 167,336 + +0.7 167,336 + +0.8 167,337 - -0.4 167,399 + +0.8 167,399 + -0.2 167,399 + +0.1 167,399 + -0.0 167,400 - +0.8 167,400 - +0.1 167,400 - -0.9 167,400 - -0.2 167,430 + -1.7 167,487 + GFF5065 0.12 -0.8 167,487 + GFF5065 0.12 -1.1 167,550 + GFF5065 0.21 -0.2 167,550 + GFF5065 0.21 -0.8 167,551 - GFF5065 0.21 +0.8
Or see this region's nucleotide sequence