Strain Fitness in Variovorax sp. SCN45 around GFF506

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF504 and GFF505 are separated by 24 nucleotidesGFF505 and GFF506 are separated by 126 nucleotidesGFF506 and GFF507 are separated by 62 nucleotidesGFF507 and GFF508 overlap by 4 nucleotides GFF504 - SAM-dependent methyltransferases, at 546,551 to 547,399 GFF504 GFF505 - no description, at 547,424 to 547,996 GFF505 GFF506 - hypothetical protein, at 548,123 to 548,629 GFF506 GFF507 - Hydrolase, alpha/beta fold family, at 548,692 to 549,585 GFF507 GFF508 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 549,582 to 550,649 GFF508 Position (kb) 548 549Strain fitness (log2 ratio) -2 -1 0 1 2at 547.154 kb on + strand, within GFF504at 547.154 kb on + strand, within GFF504at 547.155 kb on - strand, within GFF504at 547.155 kb on - strand, within GFF504at 547.275 kb on - strand, within GFF504at 547.280 kb on + strand, within GFF504at 547.280 kb on + strand, within GFF504at 547.280 kb on + strand, within GFF504at 547.280 kb on + strand, within GFF504at 547.281 kb on - strand, within GFF504at 547.281 kb on - strand, within GFF504at 547.281 kb on - strand, within GFF504at 547.373 kb on + strandat 547.373 kb on + strandat 547.374 kb on - strandat 547.374 kb on - strandat 547.374 kb on - strandat 547.374 kb on - strandat 547.479 kb on + strandat 547.479 kb on + strandat 547.479 kb on + strandat 547.480 kb on - strandat 547.533 kb on + strand, within GFF505at 547.533 kb on + strand, within GFF505at 547.533 kb on + strand, within GFF505at 547.533 kb on + strand, within GFF505at 547.534 kb on - strand, within GFF505at 547.534 kb on - strand, within GFF505at 547.549 kb on - strand, within GFF505at 547.549 kb on - strand, within GFF505at 547.560 kb on + strand, within GFF505at 547.560 kb on + strand, within GFF505at 547.561 kb on - strand, within GFF505at 547.561 kb on - strand, within GFF505at 547.561 kb on - strand, within GFF505at 547.561 kb on - strand, within GFF505at 547.657 kb on - strand, within GFF505at 547.707 kb on + strand, within GFF505at 547.707 kb on + strand, within GFF505at 547.707 kb on + strand, within GFF505at 547.707 kb on + strand, within GFF505at 547.708 kb on - strand, within GFF505at 547.708 kb on - strand, within GFF505at 547.708 kb on - strand, within GFF505at 547.708 kb on - strand, within GFF505at 547.708 kb on - strand, within GFF505at 547.708 kb on - strand, within GFF505at 547.716 kb on + strand, within GFF505at 547.717 kb on - strand, within GFF505at 547.717 kb on - strand, within GFF505at 547.717 kb on - strand, within GFF505at 547.717 kb on - strand, within GFF505at 547.717 kb on - strand, within GFF505at 547.764 kb on + strand, within GFF505at 547.764 kb on + strand, within GFF505at 547.764 kb on + strand, within GFF505at 547.764 kb on + strand, within GFF505at 547.764 kb on + strand, within GFF505at 547.765 kb on - strand, within GFF505at 547.765 kb on - strand, within GFF505at 547.765 kb on - strand, within GFF505at 547.765 kb on - strand, within GFF505at 547.765 kb on - strand, within GFF505at 547.998 kb on + strandat 548.139 kb on + strandat 548.140 kb on - strandat 548.140 kb on - strandat 548.140 kb on - strandat 548.184 kb on + strand, within GFF506at 548.185 kb on - strand, within GFF506at 548.235 kb on + strand, within GFF506at 548.613 kb on + strandat 548.613 kb on + strandat 548.613 kb on + strandat 548.613 kb on + strandat 548.613 kb on + strandat 548.613 kb on + strandat 548.614 kb on - strandat 548.921 kb on + strand, within GFF507at 548.921 kb on + strand, within GFF507at 548.921 kb on + strand, within GFF507at 548.921 kb on + strand, within GFF507at 548.921 kb on + strand, within GFF507at 548.922 kb on - strand, within GFF507at 548.967 kb on - strand, within GFF507at 549.059 kb on + strand, within GFF507at 549.122 kb on + strand, within GFF507at 549.261 kb on + strand, within GFF507at 549.261 kb on + strand, within GFF507at 549.261 kb on + strand, within GFF507at 549.261 kb on + strand, within GFF507at 549.261 kb on + strand, within GFF507at 549.323 kb on + strand, within GFF507at 549.324 kb on - strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.338 kb on + strand, within GFF507at 549.339 kb on - strand, within GFF507at 549.339 kb on - strand, within GFF507at 549.339 kb on - strand, within GFF507at 549.339 kb on - strand, within GFF507at 549.339 kb on - strand, within GFF507at 549.339 kb on - strand, within GFF507at 549.545 kb on + strandat 549.546 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
547,154 + GFF504 0.71 -0.2
547,154 + GFF504 0.71 +0.3
547,155 - GFF504 0.71 +0.7
547,155 - GFF504 0.71 -0.2
547,275 - GFF504 0.85 -0.9
547,280 + GFF504 0.86 -0.2
547,280 + GFF504 0.86 -0.6
547,280 + GFF504 0.86 +0.3
547,280 + GFF504 0.86 -0.2
547,281 - GFF504 0.86 +1.4
547,281 - GFF504 0.86 -1.5
547,281 - GFF504 0.86 -0.4
547,373 + +0.5
547,373 + -1.6
547,374 - +0.5
547,374 - -0.5
547,374 - +0.4
547,374 - +2.1
547,479 + -0.2
547,479 + -0.1
547,479 + +0.4
547,480 - +0.3
547,533 + GFF505 0.19 +0.9
547,533 + GFF505 0.19 +0.7
547,533 + GFF505 0.19 -0.8
547,533 + GFF505 0.19 +0.1
547,534 - GFF505 0.19 -0.3
547,534 - GFF505 0.19 -0.3
547,549 - GFF505 0.22 +0.3
547,549 - GFF505 0.22 +0.8
547,560 + GFF505 0.24 +1.5
547,560 + GFF505 0.24 +0.2
547,561 - GFF505 0.24 -0.1
547,561 - GFF505 0.24 +1.1
547,561 - GFF505 0.24 -2.3
547,561 - GFF505 0.24 +0.1
547,657 - GFF505 0.41 +0.6
547,707 + GFF505 0.49 -0.3
547,707 + GFF505 0.49 -1.1
547,707 + GFF505 0.49 -0.5
547,707 + GFF505 0.49 -0.0
547,708 - GFF505 0.50 -0.6
547,708 - GFF505 0.50 +0.7
547,708 - GFF505 0.50 +0.2
547,708 - GFF505 0.50 -0.1
547,708 - GFF505 0.50 -0.9
547,708 - GFF505 0.50 -0.9
547,716 + GFF505 0.51 -0.6
547,717 - GFF505 0.51 +0.4
547,717 - GFF505 0.51 -0.8
547,717 - GFF505 0.51 -0.4
547,717 - GFF505 0.51 -0.1
547,717 - GFF505 0.51 -0.7
547,764 + GFF505 0.59 +0.2
547,764 + GFF505 0.59 -0.9
547,764 + GFF505 0.59 -0.5
547,764 + GFF505 0.59 -0.2
547,764 + GFF505 0.59 -0.4
547,765 - GFF505 0.60 -0.1
547,765 - GFF505 0.60 -0.5
547,765 - GFF505 0.60 -1.4
547,765 - GFF505 0.60 -0.1
547,765 - GFF505 0.60 -0.8
547,998 + -1.1
548,139 + +0.2
548,140 - +0.0
548,140 - -0.1
548,140 - -0.4
548,184 + GFF506 0.12 -0.1
548,185 - GFF506 0.12 -0.3
548,235 + GFF506 0.22 -1.3
548,613 + -0.8
548,613 + -0.6
548,613 + +0.2
548,613 + +1.1
548,613 + +0.3
548,613 + -0.1
548,614 - +1.3
548,921 + GFF507 0.26 -0.5
548,921 + GFF507 0.26 -0.1
548,921 + GFF507 0.26 +0.5
548,921 + GFF507 0.26 -0.3
548,921 + GFF507 0.26 -1.7
548,922 - GFF507 0.26 -0.5
548,967 - GFF507 0.31 +0.6
549,059 + GFF507 0.41 -0.7
549,122 + GFF507 0.48 -0.2
549,261 + GFF507 0.64 +0.2
549,261 + GFF507 0.64 -0.3
549,261 + GFF507 0.64 +0.1
549,261 + GFF507 0.64 -0.2
549,261 + GFF507 0.64 -0.3
549,323 + GFF507 0.71 -0.1
549,324 - GFF507 0.71 -0.1
549,338 + GFF507 0.72 -0.0
549,338 + GFF507 0.72 -0.1
549,338 + GFF507 0.72 -0.6
549,338 + GFF507 0.72 -0.6
549,338 + GFF507 0.72 +0.1
549,338 + GFF507 0.72 -0.1
549,338 + GFF507 0.72 -0.0
549,338 + GFF507 0.72 -0.0
549,339 - GFF507 0.72 -0.8
549,339 - GFF507 0.72 -0.1
549,339 - GFF507 0.72 -1.4
549,339 - GFF507 0.72 -0.4
549,339 - GFF507 0.72 +1.7
549,339 - GFF507 0.72 +0.3
549,545 + -0.7
549,546 - -2.0

Or see this region's nucleotide sequence