Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4988 and GFF4989 are separated by 120 nucleotides GFF4989 and GFF4990 are separated by 60 nucleotides GFF4990 and GFF4991 are separated by 91 nucleotides
GFF4988 - Gentisate 1,2-dioxygenase (EC 1.13.11.4), at 88,655 to 89,716
GFF4988
GFF4989 - Transcriptional regulator, LysR family, at 89,837 to 90,733
GFF4989
GFF4990 - Acyl-CoA hydrolase (EC 3.1.2.20), at 90,794 to 91,243
GFF4990
GFF4991 - Polyhydroxyalkanoate granule-associated protein PhaF, at 91,335 to 91,802
GFF4991
Position (kb) 89
90
91 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 88.857 kb on + strand, within GFF4988 at 88.858 kb on - strand, within GFF4988 at 88.858 kb on - strand, within GFF4988 at 88.968 kb on + strand, within GFF4988 at 88.968 kb on + strand, within GFF4988 at 88.968 kb on + strand, within GFF4988 at 88.969 kb on - strand, within GFF4988 at 89.046 kb on + strand, within GFF4988 at 89.047 kb on - strand, within GFF4988 at 89.047 kb on - strand, within GFF4988 at 89.047 kb on - strand, within GFF4988 at 89.052 kb on + strand, within GFF4988 at 89.052 kb on + strand, within GFF4988 at 89.052 kb on + strand, within GFF4988 at 89.052 kb on + strand, within GFF4988 at 89.052 kb on + strand, within GFF4988 at 89.052 kb on + strand, within GFF4988 at 89.052 kb on + strand, within GFF4988 at 89.052 kb on + strand, within GFF4988 at 89.052 kb on + strand, within GFF4988 at 89.052 kb on + strand, within GFF4988 at 89.052 kb on + strand, within GFF4988 at 89.053 kb on - strand, within GFF4988 at 89.053 kb on - strand, within GFF4988 at 89.053 kb on - strand, within GFF4988 at 89.053 kb on - strand, within GFF4988 at 89.053 kb on - strand, within GFF4988 at 89.053 kb on - strand, within GFF4988 at 89.316 kb on + strand, within GFF4988 at 89.316 kb on + strand, within GFF4988 at 89.317 kb on - strand, within GFF4988 at 89.317 kb on - strand, within GFF4988 at 89.317 kb on - strand, within GFF4988 at 89.317 kb on - strand, within GFF4988 at 89.349 kb on + strand, within GFF4988 at 89.350 kb on - strand, within GFF4988 at 89.445 kb on + strand, within GFF4988 at 89.445 kb on + strand, within GFF4988 at 89.446 kb on - strand, within GFF4988 at 89.446 kb on - strand, within GFF4988 at 89.571 kb on + strand, within GFF4988 at 89.673 kb on + strand at 89.673 kb on + strand at 89.673 kb on + strand at 89.673 kb on + strand at 89.673 kb on + strand at 89.673 kb on + strand at 89.673 kb on + strand at 89.673 kb on + strand at 89.673 kb on + strand at 89.676 kb on + strand at 89.677 kb on - strand at 89.760 kb on + strand at 89.785 kb on - strand at 89.882 kb on + strand at 89.882 kb on + strand at 89.882 kb on + strand at 89.882 kb on + strand at 89.882 kb on + strand at 89.882 kb on + strand at 89.882 kb on + strand at 89.882 kb on + strand at 89.883 kb on - strand at 89.883 kb on - strand at 89.883 kb on - strand at 89.883 kb on - strand at 89.883 kb on - strand at 89.883 kb on - strand at 90.038 kb on + strand, within GFF4989 at 90.038 kb on + strand, within GFF4989 at 90.039 kb on - strand, within GFF4989 at 90.311 kb on + strand, within GFF4989 at 90.311 kb on + strand, within GFF4989 at 90.311 kb on + strand, within GFF4989 at 90.311 kb on + strand, within GFF4989 at 90.311 kb on + strand, within GFF4989 at 90.312 kb on - strand, within GFF4989 at 90.312 kb on - strand, within GFF4989 at 90.638 kb on + strand, within GFF4989 at 90.639 kb on - strand, within GFF4989 at 90.751 kb on + strand at 90.751 kb on + strand at 90.751 kb on + strand at 90.752 kb on - strand at 90.926 kb on + strand, within GFF4990 at 90.926 kb on + strand, within GFF4990 at 90.927 kb on - strand, within GFF4990 at 91.013 kb on + strand, within GFF4990 at 91.013 kb on + strand, within GFF4990 at 91.013 kb on + strand, within GFF4990 at 91.013 kb on + strand, within GFF4990 at 91.014 kb on - strand, within GFF4990 at 91.014 kb on - strand, within GFF4990 at 91.014 kb on - strand, within GFF4990 at 91.014 kb on - strand, within GFF4990 at 91.014 kb on - strand, within GFF4990 at 91.014 kb on - strand, within GFF4990 at 91.014 kb on - strand, within GFF4990 at 91.014 kb on - strand, within GFF4990 at 91.014 kb on - strand, within GFF4990 at 91.014 kb on - strand, within GFF4990 at 91.014 kb on - strand, within GFF4990 at 91.254 kb on + strand at 91.254 kb on + strand at 91.268 kb on + strand at 91.268 kb on + strand at 91.268 kb on + strand at 91.269 kb on - strand at 91.292 kb on - strand at 91.489 kb on - strand, within GFF4991
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 88,857 + GFF4988 0.19 +0.7 88,858 - GFF4988 0.19 -1.4 88,858 - GFF4988 0.19 -1.4 88,968 + GFF4988 0.29 +0.6 88,968 + GFF4988 0.29 -0.6 88,968 + GFF4988 0.29 +0.2 88,969 - GFF4988 0.30 -0.9 89,046 + GFF4988 0.37 -0.2 89,047 - GFF4988 0.37 -0.5 89,047 - GFF4988 0.37 -0.8 89,047 - GFF4988 0.37 +0.4 89,052 + GFF4988 0.37 -0.6 89,052 + GFF4988 0.37 -0.8 89,052 + GFF4988 0.37 +0.8 89,052 + GFF4988 0.37 +0.2 89,052 + GFF4988 0.37 -0.7 89,052 + GFF4988 0.37 +1.2 89,052 + GFF4988 0.37 +0.4 89,052 + GFF4988 0.37 -2.5 89,052 + GFF4988 0.37 -0.4 89,052 + GFF4988 0.37 -0.1 89,052 + GFF4988 0.37 +1.8 89,053 - GFF4988 0.37 +0.9 89,053 - GFF4988 0.37 -0.6 89,053 - GFF4988 0.37 -0.4 89,053 - GFF4988 0.37 -0.2 89,053 - GFF4988 0.37 -0.8 89,053 - GFF4988 0.37 +1.2 89,316 + GFF4988 0.62 +0.2 89,316 + GFF4988 0.62 -0.1 89,317 - GFF4988 0.62 +0.6 89,317 - GFF4988 0.62 -0.6 89,317 - GFF4988 0.62 +0.8 89,317 - GFF4988 0.62 +1.2 89,349 + GFF4988 0.65 -0.9 89,350 - GFF4988 0.65 +0.4 89,445 + GFF4988 0.74 -0.9 89,445 + GFF4988 0.74 +0.0 89,446 - GFF4988 0.74 +1.0 89,446 - GFF4988 0.74 +0.8 89,571 + GFF4988 0.86 +1.8 89,673 + -1.2 89,673 + -0.9 89,673 + +0.2 89,673 + +1.1 89,673 + +1.8 89,673 + -0.3 89,673 + +0.3 89,673 + -0.2 89,673 + +0.4 89,676 + +2.4 89,677 - -1.9 89,760 + -0.1 89,785 - +0.2 89,882 + +0.1 89,882 + -0.1 89,882 + -0.2 89,882 + +0.3 89,882 + -0.0 89,882 + -0.2 89,882 + -1.2 89,882 + +0.3 89,883 - +0.2 89,883 - -1.2 89,883 - +0.5 89,883 - -1.1 89,883 - +0.1 89,883 - -1.1 90,038 + GFF4989 0.22 -0.9 90,038 + GFF4989 0.22 -0.7 90,039 - GFF4989 0.23 -0.7 90,311 + GFF4989 0.53 -0.1 90,311 + GFF4989 0.53 +0.9 90,311 + GFF4989 0.53 -0.1 90,311 + GFF4989 0.53 -0.1 90,311 + GFF4989 0.53 +0.1 90,312 - GFF4989 0.53 -0.5 90,312 - GFF4989 0.53 -0.7 90,638 + GFF4989 0.89 -1.2 90,639 - GFF4989 0.89 -0.9 90,751 + -0.8 90,751 + +3.8 90,751 + -0.6 90,752 - -1.2 90,926 + GFF4990 0.29 -0.6 90,926 + GFF4990 0.29 +0.4 90,927 - GFF4990 0.30 +0.2 91,013 + GFF4990 0.49 +0.9 91,013 + GFF4990 0.49 -1.2 91,013 + GFF4990 0.49 +1.8 91,013 + GFF4990 0.49 -0.7 91,014 - GFF4990 0.49 -0.5 91,014 - GFF4990 0.49 -0.9 91,014 - GFF4990 0.49 -0.3 91,014 - GFF4990 0.49 -0.4 91,014 - GFF4990 0.49 -1.2 91,014 - GFF4990 0.49 -0.5 91,014 - GFF4990 0.49 +0.1 91,014 - GFF4990 0.49 -0.7 91,014 - GFF4990 0.49 -1.6 91,014 - GFF4990 0.49 -0.3 91,014 - GFF4990 0.49 -1.2 91,254 + +1.6 91,254 + -0.6 91,268 + +1.4 91,268 + -0.2 91,268 + -0.1 91,269 - -0.1 91,292 - -0.6 91,489 - GFF4991 0.33 -0.6
Or see this region's nucleotide sequence