Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4953 and GFF4954 are separated by 28 nucleotides GFF4954 and GFF4955 overlap by 4 nucleotides GFF4955 and GFF4956 are separated by 228 nucleotides GFF4956 and GFF4957 are separated by 164 nucleotides
GFF4953 - Beta-galactosidase (EC 3.2.1.23), at 49,460 to 54,172
GFF4953
GFF4954 - no description, at 54,201 to 54,914
GFF4954
GFF4955 - hypothetical protein, at 54,911 to 56,917
GFF4955
GFF4956 - ATP synthase F0 sector subunit c (EC 3.6.3.14), at 57,146 to 57,385
GFF4956
GFF4957 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 57,550 to 58,755
GFF4957
Position (kb) 54
55
56
57 Strain fitness (log2 ratio) -2
-1
0
1
2 at 53.919 kb on - strand at 53.922 kb on + strand at 53.923 kb on - strand at 53.923 kb on - strand at 53.923 kb on - strand at 54.617 kb on - strand, within GFF4954 at 54.617 kb on - strand, within GFF4954 at 54.797 kb on - strand, within GFF4954 at 54.896 kb on - strand at 55.824 kb on + strand, within GFF4955 at 55.824 kb on + strand, within GFF4955 at 55.824 kb on + strand, within GFF4955 at 55.824 kb on + strand, within GFF4955 at 55.824 kb on + strand, within GFF4955 at 55.824 kb on + strand, within GFF4955 at 55.824 kb on + strand, within GFF4955 at 55.824 kb on + strand, within GFF4955 at 55.825 kb on - strand, within GFF4955 at 55.825 kb on - strand, within GFF4955 at 56.394 kb on + strand, within GFF4955 at 56.395 kb on - strand, within GFF4955 at 56.395 kb on - strand, within GFF4955 at 56.403 kb on + strand, within GFF4955 at 56.484 kb on + strand, within GFF4955 at 56.485 kb on - strand, within GFF4955 at 56.487 kb on + strand, within GFF4955 at 56.487 kb on + strand, within GFF4955 at 56.487 kb on + strand, within GFF4955 at 56.487 kb on + strand, within GFF4955 at 56.488 kb on - strand, within GFF4955 at 56.488 kb on - strand, within GFF4955 at 56.488 kb on - strand, within GFF4955 at 56.488 kb on - strand, within GFF4955 at 56.488 kb on - strand, within GFF4955 at 56.610 kb on + strand, within GFF4955 at 56.610 kb on + strand, within GFF4955 at 56.610 kb on + strand, within GFF4955 at 57.099 kb on + strand at 57.434 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 53,919 - -1.1 53,922 + -0.3 53,923 - -0.5 53,923 - +0.8 53,923 - -0.8 54,617 - GFF4954 0.58 -1.4 54,617 - GFF4954 0.58 +1.2 54,797 - GFF4954 0.83 +1.8 54,896 - -1.3 55,824 + GFF4955 0.45 -0.5 55,824 + GFF4955 0.45 +0.2 55,824 + GFF4955 0.45 +0.3 55,824 + GFF4955 0.45 -1.9 55,824 + GFF4955 0.45 -0.8 55,824 + GFF4955 0.45 +1.2 55,824 + GFF4955 0.45 -1.1 55,824 + GFF4955 0.45 -0.8 55,825 - GFF4955 0.46 -0.4 55,825 - GFF4955 0.46 -0.2 56,394 + GFF4955 0.74 +0.6 56,395 - GFF4955 0.74 -0.6 56,395 - GFF4955 0.74 -2.4 56,403 + GFF4955 0.74 -0.0 56,484 + GFF4955 0.78 -0.0 56,485 - GFF4955 0.78 +0.1 56,487 + GFF4955 0.79 -1.1 56,487 + GFF4955 0.79 +0.4 56,487 + GFF4955 0.79 -0.8 56,487 + GFF4955 0.79 +0.2 56,488 - GFF4955 0.79 +0.4 56,488 - GFF4955 0.79 -0.2 56,488 - GFF4955 0.79 -1.5 56,488 - GFF4955 0.79 -0.9 56,488 - GFF4955 0.79 -1.1 56,610 + GFF4955 0.85 +1.2 56,610 + GFF4955 0.85 -0.5 56,610 + GFF4955 0.85 -0.5 57,099 + -1.2 57,434 + -0.5
Or see this region's nucleotide sequence