Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4777 and GFF4778 overlap by 4 nucleotides GFF4778 and GFF4779 are separated by 10 nucleotides GFF4779 and GFF4780 are separated by 76 nucleotides GFF4780 and GFF4781 are separated by 93 nucleotides
GFF4777 - no description, at 145,743 to 145,901
GFF4777
GFF4778 - Broad-specificity amino acid ABC transporter, permease protein 1, at 145,898 to 146,773
GFF4778
GFF4779 - Broad-specificity amino acid ABC transporter, permease protein 2, at 146,784 to 147,776
GFF4779
GFF4780 - hypothetical protein, at 147,853 to 148,308
GFF4780
GFF4781 - AttH component of AttEFGH ABC transport system, at 148,402 to 149,469
GFF4781
Position (kb) 146
147
148 Strain fitness (log2 ratio) -2
-1
0
1
2 at 145.891 kb on + strand at 145.892 kb on - strand at 145.892 kb on - strand at 145.892 kb on - strand at 145.892 kb on - strand at 145.897 kb on + strand at 145.898 kb on - strand at 145.898 kb on - strand at 145.903 kb on + strand at 145.904 kb on - strand at 145.961 kb on + strand at 145.961 kb on + strand at 145.961 kb on + strand at 145.962 kb on - strand at 146.090 kb on + strand, within GFF4778 at 146.090 kb on + strand, within GFF4778 at 146.091 kb on - strand, within GFF4778 at 146.171 kb on + strand, within GFF4778 at 146.172 kb on - strand, within GFF4778 at 146.249 kb on + strand, within GFF4778 at 146.249 kb on + strand, within GFF4778 at 146.250 kb on - strand, within GFF4778 at 146.330 kb on + strand, within GFF4778 at 146.381 kb on + strand, within GFF4778 at 146.381 kb on + strand, within GFF4778 at 146.382 kb on - strand, within GFF4778 at 146.411 kb on + strand, within GFF4778 at 146.411 kb on + strand, within GFF4778 at 146.412 kb on - strand, within GFF4778 at 146.489 kb on + strand, within GFF4778 at 146.490 kb on - strand, within GFF4778 at 146.771 kb on + strand at 146.800 kb on + strand at 146.982 kb on + strand, within GFF4779 at 146.982 kb on + strand, within GFF4779 at 147.108 kb on + strand, within GFF4779 at 147.108 kb on + strand, within GFF4779 at 147.255 kb on + strand, within GFF4779 at 147.255 kb on + strand, within GFF4779 at 147.255 kb on + strand, within GFF4779 at 147.255 kb on + strand, within GFF4779 at 147.255 kb on + strand, within GFF4779 at 147.255 kb on + strand, within GFF4779 at 147.256 kb on - strand, within GFF4779 at 147.256 kb on - strand, within GFF4779 at 147.258 kb on + strand, within GFF4779 at 147.258 kb on + strand, within GFF4779 at 147.258 kb on + strand, within GFF4779 at 147.258 kb on + strand, within GFF4779 at 147.258 kb on + strand, within GFF4779 at 147.258 kb on + strand, within GFF4779 at 147.259 kb on - strand, within GFF4779 at 147.259 kb on - strand, within GFF4779 at 147.259 kb on - strand, within GFF4779 at 147.259 kb on - strand, within GFF4779 at 147.774 kb on + strand at 147.775 kb on - strand at 147.775 kb on - strand at 147.775 kb on - strand at 148.053 kb on - strand, within GFF4780 at 148.053 kb on - strand, within GFF4780 at 148.058 kb on + strand, within GFF4780 at 148.058 kb on + strand, within GFF4780 at 148.059 kb on - strand, within GFF4780 at 148.100 kb on + strand, within GFF4780 at 148.100 kb on + strand, within GFF4780 at 148.100 kb on + strand, within GFF4780 at 148.100 kb on + strand, within GFF4780 at 148.101 kb on - strand, within GFF4780 at 148.308 kb on + strand at 148.343 kb on + strand at 148.386 kb on + strand at 148.386 kb on + strand at 148.387 kb on - strand at 148.387 kb on - strand at 148.387 kb on - strand at 148.394 kb on + strand at 148.394 kb on + strand at 148.394 kb on + strand at 148.395 kb on - strand at 148.395 kb on - strand at 148.395 kb on - strand at 148.403 kb on + strand at 148.403 kb on + strand at 148.403 kb on + strand at 148.404 kb on - strand at 148.404 kb on - strand at 148.404 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 145,891 + -2.1 145,892 - +0.2 145,892 - -1.0 145,892 - -0.2 145,892 - -0.5 145,897 + -0.0 145,898 - -0.2 145,898 - -1.4 145,903 + +0.2 145,904 - -0.3 145,961 + +0.1 145,961 + -0.5 145,961 + -0.4 145,962 - +0.2 146,090 + GFF4778 0.22 -0.1 146,090 + GFF4778 0.22 +0.5 146,091 - GFF4778 0.22 -0.6 146,171 + GFF4778 0.31 +0.2 146,172 - GFF4778 0.31 -1.0 146,249 + GFF4778 0.40 +0.3 146,249 + GFF4778 0.40 -0.3 146,250 - GFF4778 0.40 -0.4 146,330 + GFF4778 0.49 +0.6 146,381 + GFF4778 0.55 -0.2 146,381 + GFF4778 0.55 +1.2 146,382 - GFF4778 0.55 -1.0 146,411 + GFF4778 0.59 +0.6 146,411 + GFF4778 0.59 +1.8 146,412 - GFF4778 0.59 -0.3 146,489 + GFF4778 0.67 +0.6 146,490 - GFF4778 0.68 -0.8 146,771 + +0.2 146,800 + -0.1 146,982 + GFF4779 0.20 -0.7 146,982 + GFF4779 0.20 +0.3 147,108 + GFF4779 0.33 +1.4 147,108 + GFF4779 0.33 +1.1 147,255 + GFF4779 0.47 +0.2 147,255 + GFF4779 0.47 -1.0 147,255 + GFF4779 0.47 +0.2 147,255 + GFF4779 0.47 +0.9 147,255 + GFF4779 0.47 -0.1 147,255 + GFF4779 0.47 +0.6 147,256 - GFF4779 0.48 -0.0 147,256 - GFF4779 0.48 -0.1 147,258 + GFF4779 0.48 -1.5 147,258 + GFF4779 0.48 -0.3 147,258 + GFF4779 0.48 +0.6 147,258 + GFF4779 0.48 -0.3 147,258 + GFF4779 0.48 -0.4 147,258 + GFF4779 0.48 +1.6 147,259 - GFF4779 0.48 +2.6 147,259 - GFF4779 0.48 +0.9 147,259 - GFF4779 0.48 +1.1 147,259 - GFF4779 0.48 +0.2 147,774 + -0.4 147,775 - +0.4 147,775 - -1.4 147,775 - +0.7 148,053 - GFF4780 0.44 +1.0 148,053 - GFF4780 0.44 +0.6 148,058 + GFF4780 0.45 -0.4 148,058 + GFF4780 0.45 -1.1 148,059 - GFF4780 0.45 -0.4 148,100 + GFF4780 0.54 -1.9 148,100 + GFF4780 0.54 +1.6 148,100 + GFF4780 0.54 -1.4 148,100 + GFF4780 0.54 -0.3 148,101 - GFF4780 0.54 +0.6 148,308 + -0.2 148,343 + +0.2 148,386 + -0.7 148,386 + -0.5 148,387 - -1.2 148,387 - +1.6 148,387 - +0.6 148,394 + -0.3 148,394 + -1.2 148,394 + -0.8 148,395 - +1.6 148,395 - -0.7 148,395 - -0.0 148,403 + +0.0 148,403 + -0.4 148,403 + -0.7 148,404 - -0.1 148,404 - -0.2 148,404 - -0.6
Or see this region's nucleotide sequence