Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4763 and GFF4764 are separated by 15 nucleotides GFF4764 and GFF4765 are separated by 7 nucleotides GFF4765 and GFF4766 are separated by 7 nucleotides GFF4766 and GFF4767 are separated by 24 nucleotides
GFF4763 - NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3), at 130,397 to 131,884
GFF4763
GFF4764 - Putative transmembrane protein, at 131,900 to 132,205
GFF4764
GFF4765 - ADP-ribose pyrophosphatase (EC 3.6.1.13), at 132,213 to 132,830
GFF4765
GFF4766 - identified by similarity to GB:AAK22812.1; match to protein family HMM PF06676, at 132,838 to 133,302
GFF4766
GFF4767 - Efflux ABC transporter, permease/ATP-binding protein, at 133,327 to 135,087
GFF4767
Position (kb) 132
133 Strain fitness (log2 ratio) -2
-1
0
1
2 at 131.852 kb on + strand at 132.126 kb on - strand, within GFF4764 at 132.341 kb on + strand, within GFF4765 at 132.341 kb on + strand, within GFF4765 at 132.341 kb on + strand, within GFF4765 at 132.342 kb on - strand, within GFF4765 at 132.342 kb on - strand, within GFF4765 at 132.342 kb on - strand, within GFF4765 at 132.342 kb on - strand, within GFF4765 at 132.342 kb on - strand, within GFF4765 at 132.342 kb on - strand, within GFF4765 at 132.357 kb on + strand, within GFF4765 at 132.358 kb on - strand, within GFF4765 at 132.358 kb on - strand, within GFF4765 at 132.538 kb on - strand, within GFF4765 at 132.538 kb on - strand, within GFF4765 at 132.588 kb on + strand, within GFF4765 at 132.589 kb on - strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.608 kb on + strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.609 kb on - strand, within GFF4765 at 132.612 kb on + strand, within GFF4765 at 132.612 kb on + strand, within GFF4765 at 132.612 kb on + strand, within GFF4765 at 132.613 kb on - strand, within GFF4765 at 132.613 kb on - strand, within GFF4765 at 132.613 kb on - strand, within GFF4765 at 132.613 kb on - strand, within GFF4765 at 132.613 kb on - strand, within GFF4765 at 133.174 kb on + strand, within GFF4766 at 133.300 kb on + strand at 133.300 kb on + strand at 133.300 kb on + strand at 133.301 kb on - strand at 133.301 kb on - strand at 133.303 kb on + strand at 133.303 kb on + strand at 133.303 kb on + strand at 133.303 kb on + strand at 133.303 kb on + strand at 133.304 kb on - strand at 133.304 kb on - strand at 133.304 kb on - strand at 133.304 kb on - strand at 133.304 kb on - strand at 133.304 kb on - strand at 133.361 kb on + strand at 133.361 kb on + strand at 133.362 kb on - strand at 133.362 kb on - strand at 133.667 kb on + strand, within GFF4767 at 133.668 kb on - strand, within GFF4767 at 133.668 kb on - strand, within GFF4767
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 131,852 + +2.1 132,126 - GFF4764 0.74 -0.0 132,341 + GFF4765 0.21 +0.3 132,341 + GFF4765 0.21 -1.3 132,341 + GFF4765 0.21 -0.0 132,342 - GFF4765 0.21 +0.1 132,342 - GFF4765 0.21 -0.1 132,342 - GFF4765 0.21 -0.9 132,342 - GFF4765 0.21 +1.7 132,342 - GFF4765 0.21 +1.6 132,342 - GFF4765 0.21 -1.8 132,357 + GFF4765 0.23 -0.3 132,358 - GFF4765 0.23 +0.4 132,358 - GFF4765 0.23 +0.1 132,538 - GFF4765 0.53 -0.4 132,538 - GFF4765 0.53 -0.0 132,588 + GFF4765 0.61 +0.2 132,589 - GFF4765 0.61 +1.0 132,608 + GFF4765 0.64 -0.7 132,608 + GFF4765 0.64 -0.7 132,608 + GFF4765 0.64 -0.1 132,608 + GFF4765 0.64 -0.3 132,608 + GFF4765 0.64 -0.2 132,608 + GFF4765 0.64 -0.4 132,608 + GFF4765 0.64 +0.3 132,608 + GFF4765 0.64 +0.0 132,608 + GFF4765 0.64 +0.8 132,608 + GFF4765 0.64 -0.8 132,608 + GFF4765 0.64 +1.6 132,609 - GFF4765 0.64 -0.1 132,609 - GFF4765 0.64 -1.1 132,609 - GFF4765 0.64 +0.2 132,609 - GFF4765 0.64 +0.1 132,609 - GFF4765 0.64 -0.3 132,609 - GFF4765 0.64 -0.4 132,609 - GFF4765 0.64 +0.0 132,609 - GFF4765 0.64 -0.0 132,609 - GFF4765 0.64 +0.2 132,609 - GFF4765 0.64 -0.1 132,609 - GFF4765 0.64 -0.0 132,612 + GFF4765 0.65 +0.6 132,612 + GFF4765 0.65 +2.1 132,612 + GFF4765 0.65 +0.3 132,613 - GFF4765 0.65 -0.6 132,613 - GFF4765 0.65 -0.9 132,613 - GFF4765 0.65 +1.3 132,613 - GFF4765 0.65 -0.8 132,613 - GFF4765 0.65 -0.9 133,174 + GFF4766 0.72 -1.0 133,300 + +0.6 133,300 + +0.7 133,300 + -0.2 133,301 - +0.1 133,301 - +0.4 133,303 + -0.9 133,303 + +0.4 133,303 + +0.4 133,303 + -0.8 133,303 + -0.4 133,304 - +0.4 133,304 - -0.8 133,304 - -1.4 133,304 - -0.0 133,304 - -0.2 133,304 - -0.0 133,361 + +0.1 133,361 + +0.1 133,362 - +0.1 133,362 - -0.5 133,667 + GFF4767 0.19 -0.3 133,668 - GFF4767 0.19 -0.3 133,668 - GFF4767 0.19 -0.8
Or see this region's nucleotide sequence