Strain Fitness in Variovorax sp. SCN45 around GFF4742

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
107,443	-		GFF4740	0.53	+0.3
107,469	+		GFF4740	0.57	+0.8
107,469	+		GFF4740	0.57	+0.9
107,469	+		GFF4740	0.57	-0.5
107,469	+		GFF4740	0.57	+0.3
107,470	-		GFF4740	0.57	+0.5
107,470	-		GFF4740	0.57	+0.6
107,470	-		GFF4740	0.57	-1.8
107,470	-		GFF4740	0.57	+0.4
107,532	+		GFF4740	0.67	-0.3
107,532	+		GFF4740	0.67	+0.6
107,532	+		GFF4740	0.67	-1.4
107,532	+		GFF4740	0.67	-1.6
107,532	+		GFF4740	0.67	+0.6
107,532	+		GFF4740	0.67	-1.4
107,532	+		GFF4740	0.67	-0.8
107,532	+		GFF4740	0.67	+0.2
107,532	+		GFF4740	0.67	-0.2
107,533	-		GFF4740	0.67	-0.5
107,533	-		GFF4740	0.67	-1.6
107,533	-		GFF4740	0.67	+0.3
107,533	-		GFF4740	0.67	+1.6
107,533	-		GFF4740	0.67	+0.3
107,533	-		GFF4740	0.67	+0.8
107,533	-		GFF4740	0.67	+0.2
107,533	-		GFF4740	0.67	-0.3
107,535	+		GFF4740	0.67	-0.3
107,535	+		GFF4740	0.67	+0.6
107,535	+		GFF4740	0.67	-1.0
107,535	+		GFF4740	0.67	+0.9
107,535	+		GFF4740	0.67	-0.5
107,535	+		GFF4740	0.67	+0.7
107,535	+		GFF4740	0.67	+0.7
107,536	-		GFF4740	0.67	-1.0
107,536	-		GFF4740	0.67	-1.4
107,536	-		GFF4740	0.67	-1.6
107,536	-		GFF4740	0.67	-0.4
107,536	-		GFF4740	0.67	+0.4
107,536	-		GFF4740	0.67	+0.1
107,538	+		GFF4740	0.68	-0.3
107,538	+		GFF4740	0.68	+1.0
107,539	-		GFF4740	0.68	+0.9
107,539	-		GFF4740	0.68	-0.2
107,539	-		GFF4740	0.68	+0.2
107,539	-		GFF4740	0.68	+0.6
107,539	-		GFF4740	0.68	-1.8
107,539	-		GFF4740	0.68	-0.3
107,539	-		GFF4740	0.68	+1.3
107,539	-		GFF4740	0.68	-0.3
107,539	-		GFF4740	0.68	-0.9
107,539	-		GFF4740	0.68	-0.6
107,539	-		GFF4740	0.68	+1.1
107,539	-		GFF4740	0.68	+0.2
107,539	-		GFF4740	0.68	-1.6
107,637	+		GFF4740	0.83	-0.1
107,637	+		GFF4740	0.83	+0.6
107,638	-		GFF4740	0.83	-0.8
107,638	-		GFF4740	0.83	-0.5
107,638	-		GFF4740	0.83	-1.2
107,638	-		GFF4740	0.83	+0.4
107,761	-				+1.1
107,761	-				+0.2
107,815	-				-0.5
107,891	+				+0.8
107,891	+				+0.1
107,891	+				+0.8
107,891	+				-0.4
107,892	-				-0.1
107,892	-				-0.8
107,892	-				+0.3
107,901	+				-0.5
107,901	+				+0.6
107,901	+				-0.6
107,901	+				+0.2
107,901	+				-0.3
107,902	-				-0.5
107,902	-				+0.2
107,902	-				-0.1
107,902	-				-0.1
107,902	-				-0.4
107,902	-				+0.3
108,022	-		GFF4741	0.33	-1.4
108,022	-		GFF4741	0.33	-0.6
108,222	+		GFF4741	0.87	-0.2
108,318	+				-0.6
108,318	+				-1.0
108,318	+				-0.0
108,318	+				-0.0
108,318	+				+1.0
108,318	+				+1.6
108,319	-				-0.3
108,319	-				-0.1
108,319	-				+0.3
108,367	-				+1.2
108,367	-				-0.7
108,367	-				-0.3
108,408	+				-1.0
108,408	+				-0.6
108,409	-				-0.2
108,449	+				-0.7
108,449	+				-0.9
108,449	+				-0.0
108,450	-				-0.4
108,647	-		GFF4742	0.20	-0.4
108,817	+		GFF4742	0.33	+1.6
108,818	-		GFF4742	0.33	+2.6
108,950	-		GFF4742	0.43	-0.3
108,967	+		GFF4742	0.45	-0.0
108,967	+		GFF4742	0.45	+0.3
108,967	+		GFF4742	0.45	+0.0
108,968	-		GFF4742	0.45	+1.6
108,968	-		GFF4742	0.45	+0.2
108,968	-		GFF4742	0.45	+0.0
109,087	+		GFF4742	0.54	-0.4
109,088	-		GFF4742	0.54	-0.0
109,088	-		GFF4742	0.54	-0.0
109,088	-		GFF4742	0.54	-0.0
109,088	-		GFF4742	0.54	+0.5
109,201	+		GFF4742	0.63	-0.2
109,201	+		GFF4742	0.63	-0.2
109,201	+		GFF4742	0.63	-0.2
109,201	+		GFF4742	0.63	+0.6
109,201	+		GFF4742	0.63	+0.1
109,201	+		GFF4742	0.63	+0.4
109,201	+		GFF4742	0.63	-0.3
109,202	-		GFF4742	0.63	+0.6
109,202	-		GFF4742	0.63	-0.4
109,202	-		GFF4742	0.63	-0.6
109,202	-		GFF4742	0.63	+0.2
109,202	-		GFF4742	0.63	-0.3
109,202	-		GFF4742	0.63	+0.5
109,202	-		GFF4742	0.63	-1.3
109,202	-		GFF4742	0.63	-0.3
109,202	-		GFF4742	0.63	+0.9
109,202	-		GFF4742	0.63	+0.5
109,203	+		GFF4742	0.63	+0.0
109,203	+		GFF4742	0.63	+0.3
109,203	+		GFF4742	0.63	-0.6
109,203	+		GFF4742	0.63	+0.2
109,203	+		GFF4742	0.63	+0.4
109,204	-		GFF4742	0.63	+0.1
109,204	-		GFF4742	0.63	+0.5
109,204	-		GFF4742	0.63	+0.0
109,210	+		GFF4742	0.64	-0.8
109,210	+		GFF4742	0.64	-0.0
109,211	-		GFF4742	0.64	-0.4
109,363	+		GFF4742	0.76	-0.9
109,363	+		GFF4742	0.76	+0.7
109,363	+		GFF4742	0.76	+0.6
109,363	+		GFF4742	0.76	-0.1
109,363	+		GFF4742	0.76	-0.9
109,363	+		GFF4742	0.76	+0.8
109,363	+		GFF4742	0.76	-0.7
109,363	+		GFF4742	0.76	-0.8
109,363	+		GFF4742	0.76	+0.0
109,364	-		GFF4742	0.76	+1.0
109,364	-		GFF4742	0.76	+0.5
109,364	-		GFF4742	0.76	-0.0
109,364	-		GFF4742	0.76	-1.4
109,364	-		GFF4742	0.76	-0.2
109,364	-		GFF4742	0.76	+0.6
109,364	-		GFF4742	0.76	-0.2
109,364	-		GFF4742	0.76	+1.6
109,364	-		GFF4742	0.76	-0.2
109,403	+		GFF4742	0.79	+0.1
109,403	+		GFF4742	0.79	-1.3
109,403	+		GFF4742	0.79	+0.2
109,404	-		GFF4742	0.79	-0.6
109,404	-		GFF4742	0.79	-0.4
109,404	-		GFF4742	0.79	-1.7
109,404	-		GFF4742	0.79	+1.0
109,404	-		GFF4742	0.79	-0.7
109,404	-		GFF4742	0.79	-0.2
109,480	+		GFF4742	0.85	-0.0
109,481	-		GFF4742	0.85	+0.9
109,598	-				+0.1
109,879	+		GFF4743	0.14	+1.2
109,880	-		GFF4743	0.14	-0.8
110,305	+		GFF4743	0.51	-0.5
110,305	+		GFF4743	0.51	+1.1
110,305	+		GFF4743	0.51	-0.0
110,306	-		GFF4743	0.51	-0.6
110,306	-		GFF4743	0.51	-0.7
110,317	+		GFF4743	0.52	-0.5
110,317	+		GFF4743	0.52	+1.6
110,317	+		GFF4743	0.52	-0.9
110,317	+		GFF4743	0.52	-0.3
110,320	+		GFF4743	0.52	+0.7
110,320	+		GFF4743	0.52	-0.5
110,320	+		GFF4743	0.52	-1.4
110,320	+		GFF4743	0.52	+0.8
110,320	+		GFF4743	0.52	-0.3
110,321	-		GFF4743	0.52	-0.2
110,321	-		GFF4743	0.52	+0.2
110,321	-		GFF4743	0.52	-0.2
110,496	+		GFF4743	0.67	-0.5
110,496	+		GFF4743	0.67	+0.2
110,496	+		GFF4743	0.67	-0.4
110,497	-		GFF4743	0.67	-0.3
110,497	-		GFF4743	0.67	+1.1
110,665	+		GFF4743	0.81	+0.0
110,665	+		GFF4743	0.81	+0.1
110,665	+		GFF4743	0.81	+0.4
110,665	+		GFF4743	0.81	-0.9
110,665	+		GFF4743	0.81	+0.6
110,665	+		GFF4743	0.81	+1.6
110,665	+		GFF4743	0.81	-0.4
110,665	+		GFF4743	0.81	+0.4
110,665	+		GFF4743	0.81	-0.9
110,665	+		GFF4743	0.81	-0.4
110,665	+		GFF4743	0.81	+1.0
110,665	+		GFF4743	0.81	+0.3
110,665	+		GFF4743	0.81	-0.3
110,666	-		GFF4743	0.81	-1.7
110,666	-		GFF4743	0.81	-0.6
110,666	-		GFF4743	0.81	-0.4
110,666	-		GFF4743	0.81	-1.0
110,666	-		GFF4743	0.81	+0.1
110,666	-		GFF4743	0.81	-0.3
110,666	-		GFF4743	0.81	+0.5
110,666	-		GFF4743	0.81	+0.5
110,666	-		GFF4743	0.81	+0.6