Strain Fitness in Variovorax sp. SCN45 around GFF4595

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4594 and GFF4595 are separated by 175 nucleotidesGFF4595 and GFF4596 are separated by 61 nucleotides GFF4594 - Aspartate ammonia-lyase (EC 4.3.1.1), at 234,526 to 235,998 GFF4594 GFF4595 - Transcriptional regulator, at 236,174 to 237,160 GFF4595 GFF4596 - Amidase family protein BDAG_03520, at 237,222 to 238,664 GFF4596 Position (kb) 236 237 238Strain fitness (log2 ratio) -2 -1 0 1 2at 235.248 kb on - strand, within GFF4594at 235.248 kb on - strand, within GFF4594at 235.248 kb on - strand, within GFF4594at 235.248 kb on - strand, within GFF4594at 235.268 kb on + strand, within GFF4594at 235.269 kb on - strand, within GFF4594at 235.269 kb on - strand, within GFF4594at 235.382 kb on + strand, within GFF4594at 235.382 kb on + strand, within GFF4594at 235.382 kb on + strand, within GFF4594at 235.382 kb on + strand, within GFF4594at 235.382 kb on + strand, within GFF4594at 235.382 kb on + strand, within GFF4594at 235.382 kb on + strand, within GFF4594at 235.382 kb on + strand, within GFF4594at 235.382 kb on + strand, within GFF4594at 235.382 kb on + strand, within GFF4594at 235.382 kb on + strand, within GFF4594at 235.383 kb on - strand, within GFF4594at 235.383 kb on - strand, within GFF4594at 235.383 kb on - strand, within GFF4594at 235.383 kb on - strand, within GFF4594at 235.383 kb on - strand, within GFF4594at 235.383 kb on - strand, within GFF4594at 235.383 kb on - strand, within GFF4594at 235.383 kb on - strand, within GFF4594at 235.559 kb on + strand, within GFF4594at 235.559 kb on + strand, within GFF4594at 235.559 kb on + strand, within GFF4594at 235.559 kb on + strand, within GFF4594at 235.560 kb on - strand, within GFF4594at 235.560 kb on - strand, within GFF4594at 235.560 kb on - strand, within GFF4594at 235.560 kb on - strand, within GFF4594at 235.616 kb on + strand, within GFF4594at 235.841 kb on + strand, within GFF4594at 235.842 kb on - strand, within GFF4594at 235.842 kb on - strand, within GFF4594at 235.934 kb on + strandat 235.935 kb on - strandat 235.998 kb on + strandat 235.998 kb on + strandat 235.998 kb on + strandat 235.998 kb on + strandat 235.998 kb on + strandat 235.999 kb on - strandat 235.999 kb on - strandat 235.999 kb on - strandat 235.999 kb on - strandat 235.999 kb on - strandat 235.999 kb on - strandat 235.999 kb on - strandat 235.999 kb on - strandat 235.999 kb on - strandat 236.087 kb on + strandat 236.087 kb on + strandat 236.087 kb on + strandat 236.087 kb on + strandat 236.087 kb on + strandat 236.087 kb on + strandat 236.087 kb on + strandat 236.087 kb on + strandat 236.087 kb on + strandat 236.087 kb on + strandat 236.088 kb on - strandat 236.088 kb on - strandat 236.088 kb on - strandat 236.145 kb on + strandat 236.202 kb on + strandat 236.203 kb on - strandat 236.316 kb on + strand, within GFF4595at 236.316 kb on + strand, within GFF4595at 236.317 kb on - strand, within GFF4595at 236.481 kb on + strand, within GFF4595at 236.481 kb on + strand, within GFF4595at 236.547 kb on + strand, within GFF4595at 236.548 kb on - strand, within GFF4595at 236.562 kb on + strand, within GFF4595at 236.562 kb on + strand, within GFF4595at 236.563 kb on - strand, within GFF4595at 236.571 kb on + strand, within GFF4595at 236.571 kb on + strand, within GFF4595at 236.572 kb on - strand, within GFF4595at 236.572 kb on - strand, within GFF4595at 236.679 kb on + strand, within GFF4595at 236.679 kb on + strand, within GFF4595at 236.679 kb on + strand, within GFF4595at 236.679 kb on + strand, within GFF4595at 236.679 kb on + strand, within GFF4595at 236.680 kb on - strand, within GFF4595at 236.680 kb on - strand, within GFF4595at 236.721 kb on + strand, within GFF4595at 236.721 kb on + strand, within GFF4595at 236.721 kb on + strand, within GFF4595at 236.722 kb on - strand, within GFF4595at 236.967 kb on + strand, within GFF4595at 237.080 kb on + strandat 237.080 kb on + strandat 237.080 kb on + strandat 237.080 kb on + strandat 237.080 kb on + strandat 237.081 kb on - strandat 237.081 kb on - strandat 237.081 kb on - strandat 237.081 kb on - strandat 237.081 kb on - strandat 237.081 kb on - strandat 237.143 kb on + strandat 237.143 kb on + strandat 237.143 kb on + strandat 237.143 kb on + strandat 237.143 kb on + strandat 237.144 kb on - strandat 237.144 kb on - strandat 237.144 kb on - strandat 237.151 kb on + strandat 237.151 kb on + strandat 237.151 kb on + strandat 237.151 kb on + strandat 237.151 kb on + strandat 237.152 kb on - strandat 237.152 kb on - strandat 237.152 kb on - strandat 237.152 kb on - strandat 237.152 kb on - strandat 237.171 kb on + strandat 237.633 kb on + strand, within GFF4596at 237.633 kb on + strand, within GFF4596at 237.633 kb on + strand, within GFF4596at 237.633 kb on + strand, within GFF4596at 237.633 kb on + strand, within GFF4596at 237.633 kb on + strand, within GFF4596at 237.633 kb on + strand, within GFF4596at 237.633 kb on + strand, within GFF4596at 237.633 kb on + strand, within GFF4596at 237.633 kb on + strand, within GFF4596at 237.633 kb on + strand, within GFF4596at 237.633 kb on + strand, within GFF4596at 237.633 kb on + strand, within GFF4596at 237.634 kb on - strand, within GFF4596at 237.634 kb on - strand, within GFF4596at 237.634 kb on - strand, within GFF4596at 237.634 kb on - strand, within GFF4596at 237.634 kb on - strand, within GFF4596at 237.634 kb on - strand, within GFF4596at 237.634 kb on - strand, within GFF4596at 237.634 kb on - strand, within GFF4596at 237.634 kb on - strand, within GFF4596at 237.634 kb on - strand, within GFF4596at 237.634 kb on - strand, within GFF4596at 237.666 kb on + strand, within GFF4596at 237.667 kb on - strand, within GFF4596at 237.712 kb on + strand, within GFF4596

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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235,248 - GFF4594 0.49 -0.8
235,248 - GFF4594 0.49 +0.8
235,248 - GFF4594 0.49 +0.1
235,248 - GFF4594 0.49 -1.5
235,268 + GFF4594 0.50 +0.1
235,269 - GFF4594 0.50 +0.3
235,269 - GFF4594 0.50 +0.1
235,382 + GFF4594 0.58 -0.2
235,382 + GFF4594 0.58 -0.6
235,382 + GFF4594 0.58 -0.3
235,382 + GFF4594 0.58 +0.2
235,382 + GFF4594 0.58 +0.1
235,382 + GFF4594 0.58 +1.4
235,382 + GFF4594 0.58 -0.9
235,382 + GFF4594 0.58 -0.7
235,382 + GFF4594 0.58 -0.3
235,382 + GFF4594 0.58 +0.9
235,382 + GFF4594 0.58 +0.4
235,383 - GFF4594 0.58 -1.1
235,383 - GFF4594 0.58 +1.0
235,383 - GFF4594 0.58 +0.5
235,383 - GFF4594 0.58 -0.3
235,383 - GFF4594 0.58 -0.9
235,383 - GFF4594 0.58 +1.7
235,383 - GFF4594 0.58 +0.5
235,383 - GFF4594 0.58 -0.1
235,559 + GFF4594 0.70 -0.7
235,559 + GFF4594 0.70 -0.3
235,559 + GFF4594 0.70 -0.5
235,559 + GFF4594 0.70 +0.3
235,560 - GFF4594 0.70 -1.1
235,560 - GFF4594 0.70 -0.5
235,560 - GFF4594 0.70 -0.5
235,560 - GFF4594 0.70 -0.4
235,616 + GFF4594 0.74 -0.3
235,841 + GFF4594 0.89 +0.4
235,842 - GFF4594 0.89 -0.4
235,842 - GFF4594 0.89 -0.1
235,934 + -2.1
235,935 - +1.5
235,998 + -0.6
235,998 + -0.0
235,998 + +0.5
235,998 + -0.2
235,998 + +0.0
235,999 - +0.2
235,999 - +1.4
235,999 - -0.1
235,999 - -0.5
235,999 - -0.4
235,999 - -0.7
235,999 - +1.2
235,999 - +0.2
235,999 - -1.4
236,087 + -0.0
236,087 + -0.0
236,087 + -2.1
236,087 + -0.5
236,087 + +1.3
236,087 + -1.3
236,087 + -0.4
236,087 + +0.1
236,087 + -0.7
236,087 + -0.7
236,088 - +0.0
236,088 - -0.4
236,088 - -1.3
236,145 + -0.3
236,202 + -0.5
236,203 - -0.4
236,316 + GFF4595 0.14 -0.6
236,316 + GFF4595 0.14 -0.1
236,317 - GFF4595 0.14 -0.1
236,481 + GFF4595 0.31 -1.3
236,481 + GFF4595 0.31 -0.6
236,547 + GFF4595 0.38 +0.7
236,548 - GFF4595 0.38 -0.2
236,562 + GFF4595 0.39 -0.1
236,562 + GFF4595 0.39 -0.6
236,563 - GFF4595 0.39 -0.8
236,571 + GFF4595 0.40 +0.7
236,571 + GFF4595 0.40 +1.4
236,572 - GFF4595 0.40 -0.3
236,572 - GFF4595 0.40 -0.0
236,679 + GFF4595 0.51 +1.8
236,679 + GFF4595 0.51 +0.7
236,679 + GFF4595 0.51 +0.9
236,679 + GFF4595 0.51 -1.6
236,679 + GFF4595 0.51 +0.5
236,680 - GFF4595 0.51 +0.8
236,680 - GFF4595 0.51 +1.7
236,721 + GFF4595 0.55 +0.1
236,721 + GFF4595 0.55 +0.1
236,721 + GFF4595 0.55 -0.1
236,722 - GFF4595 0.56 +0.2
236,967 + GFF4595 0.80 +0.5
237,080 + -0.5
237,080 + +0.6
237,080 + -0.0
237,080 + +0.7
237,080 + +0.5
237,081 - +1.7
237,081 - -0.6
237,081 - +0.0
237,081 - +1.3
237,081 - +0.6
237,081 - -0.3
237,143 + -1.1
237,143 + -0.9
237,143 + -0.0
237,143 + -1.4
237,143 + +0.1
237,144 - -0.3
237,144 - +0.1
237,144 - -0.1
237,151 + -0.3
237,151 + +0.4
237,151 + -0.9
237,151 + -0.1
237,151 + +0.2
237,152 - +0.5
237,152 - +0.4
237,152 - +0.7
237,152 - +0.3
237,152 - +0.3
237,171 + +0.3
237,633 + GFF4596 0.28 -1.0
237,633 + GFF4596 0.28 -0.8
237,633 + GFF4596 0.28 -1.1
237,633 + GFF4596 0.28 +2.3
237,633 + GFF4596 0.28 -0.5
237,633 + GFF4596 0.28 -0.5
237,633 + GFF4596 0.28 -0.5
237,633 + GFF4596 0.28 -0.6
237,633 + GFF4596 0.28 -0.2
237,633 + GFF4596 0.28 -0.3
237,633 + GFF4596 0.28 -0.6
237,633 + GFF4596 0.28 -0.3
237,633 + GFF4596 0.28 +0.6
237,634 - GFF4596 0.29 -0.3
237,634 - GFF4596 0.29 +1.0
237,634 - GFF4596 0.29 -0.7
237,634 - GFF4596 0.29 -1.1
237,634 - GFF4596 0.29 -0.2
237,634 - GFF4596 0.29 -0.6
237,634 - GFF4596 0.29 -0.7
237,634 - GFF4596 0.29 -0.2
237,634 - GFF4596 0.29 -0.1
237,634 - GFF4596 0.29 +1.5
237,634 - GFF4596 0.29 +0.6
237,666 + GFF4596 0.31 -1.0
237,667 - GFF4596 0.31 -0.3
237,712 + GFF4596 0.34 +0.0

Or see this region's nucleotide sequence