Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4454 and GFF4455 are separated by 44 nucleotides GFF4455 and GFF4456 are separated by 16 nucleotides GFF4456 and GFF4457 overlap by 4 nucleotides
GFF4454 - Exoribonuclease II (EC 3.1.13.1), at 94,625 to 96,682
GFF4454
GFF4455 - TonB protein, at 96,727 to 97,581
GFF4455
GFF4456 - Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25), at 97,598 to 98,470
GFF4456
GFF4457 - Monofunctional biosynthetic peptidoglycan transglycosylase, at 98,467 to 99,210
GFF4457
Position (kb) 96
97
98 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 95.886 kb on - strand, within GFF4454 at 95.886 kb on - strand, within GFF4454 at 96.143 kb on + strand, within GFF4454 at 96.143 kb on + strand, within GFF4454 at 96.143 kb on + strand, within GFF4454 at 96.143 kb on + strand, within GFF4454 at 96.143 kb on + strand, within GFF4454 at 96.144 kb on - strand, within GFF4454 at 96.144 kb on - strand, within GFF4454 at 96.144 kb on - strand, within GFF4454 at 96.175 kb on + strand, within GFF4454 at 96.302 kb on + strand, within GFF4454 at 96.303 kb on - strand, within GFF4454 at 96.303 kb on - strand, within GFF4454 at 96.311 kb on + strand, within GFF4454 at 96.312 kb on - strand, within GFF4454 at 96.312 kb on - strand, within GFF4454 at 96.312 kb on - strand, within GFF4454 at 96.357 kb on - strand, within GFF4454 at 96.357 kb on - strand, within GFF4454 at 96.721 kb on + strand at 96.721 kb on + strand at 96.721 kb on + strand at 97.231 kb on + strand, within GFF4455 at 97.231 kb on + strand, within GFF4455 at 97.231 kb on + strand, within GFF4455 at 97.231 kb on + strand, within GFF4455 at 97.232 kb on - strand, within GFF4455 at 97.270 kb on + strand, within GFF4455 at 97.271 kb on - strand, within GFF4455 at 97.271 kb on - strand, within GFF4455 at 97.271 kb on - strand, within GFF4455 at 97.345 kb on + strand, within GFF4455 at 97.345 kb on + strand, within GFF4455 at 97.346 kb on - strand, within GFF4455 at 97.346 kb on - strand, within GFF4455 at 97.346 kb on - strand, within GFF4455 at 97.607 kb on + strand at 97.607 kb on + strand at 97.607 kb on + strand at 97.608 kb on - strand at 97.608 kb on - strand at 97.608 kb on - strand at 97.608 kb on - strand at 97.694 kb on + strand, within GFF4456 at 97.695 kb on - strand, within GFF4456 at 98.276 kb on + strand, within GFF4456 at 98.276 kb on + strand, within GFF4456 at 98.276 kb on + strand, within GFF4456 at 98.276 kb on + strand, within GFF4456 at 98.276 kb on + strand, within GFF4456 at 98.276 kb on + strand, within GFF4456 at 98.276 kb on + strand, within GFF4456 at 98.276 kb on + strand, within GFF4456 at 98.277 kb on - strand, within GFF4456 at 98.277 kb on - strand, within GFF4456 at 98.277 kb on - strand, within GFF4456 at 98.277 kb on - strand, within GFF4456
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 95,886 - GFF4454 0.61 -0.2 95,886 - GFF4454 0.61 -1.3 96,143 + GFF4454 0.74 +0.1 96,143 + GFF4454 0.74 -2.0 96,143 + GFF4454 0.74 -1.1 96,143 + GFF4454 0.74 -0.1 96,143 + GFF4454 0.74 -1.5 96,144 - GFF4454 0.74 +0.7 96,144 - GFF4454 0.74 -2.8 96,144 - GFF4454 0.74 -0.9 96,175 + GFF4454 0.75 +0.7 96,302 + GFF4454 0.81 -1.4 96,303 - GFF4454 0.82 -0.3 96,303 - GFF4454 0.82 -2.1 96,311 + GFF4454 0.82 +0.7 96,312 - GFF4454 0.82 -1.9 96,312 - GFF4454 0.82 -0.9 96,312 - GFF4454 0.82 -0.9 96,357 - GFF4454 0.84 -1.9 96,357 - GFF4454 0.84 -1.1 96,721 + -0.5 96,721 + +0.4 96,721 + -0.7 97,231 + GFF4455 0.59 -1.1 97,231 + GFF4455 0.59 +0.7 97,231 + GFF4455 0.59 -0.6 97,231 + GFF4455 0.59 +0.3 97,232 - GFF4455 0.59 -0.4 97,270 + GFF4455 0.64 -0.1 97,271 - GFF4455 0.64 -0.9 97,271 - GFF4455 0.64 +1.4 97,271 - GFF4455 0.64 -0.6 97,345 + GFF4455 0.72 -0.9 97,345 + GFF4455 0.72 +1.5 97,346 - GFF4455 0.72 +0.3 97,346 - GFF4455 0.72 -0.1 97,346 - GFF4455 0.72 +0.9 97,607 + +0.3 97,607 + -0.1 97,607 + +0.1 97,608 - -1.1 97,608 - +0.3 97,608 - -0.6 97,608 - -0.2 97,694 + GFF4456 0.11 +0.5 97,695 - GFF4456 0.11 -0.7 98,276 + GFF4456 0.78 +0.4 98,276 + GFF4456 0.78 -0.6 98,276 + GFF4456 0.78 -0.2 98,276 + GFF4456 0.78 -1.1 98,276 + GFF4456 0.78 -0.8 98,276 + GFF4456 0.78 -1.0 98,276 + GFF4456 0.78 +0.1 98,276 + GFF4456 0.78 -0.2 98,277 - GFF4456 0.78 -0.5 98,277 - GFF4456 0.78 +0.9 98,277 - GFF4456 0.78 +0.7 98,277 - GFF4456 0.78 +2.7
Or see this region's nucleotide sequence