Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4231 and GFF4232 are separated by 76 nucleotides GFF4232 and GFF4233 overlap by 4 nucleotides GFF4233 and GFF4234 overlap by 4 nucleotides GFF4234 and GFF4235 overlap by 4 nucleotides
GFF4231 - no description, at 143,055 to 144,026
GFF4231
GFF4232 - no description, at 144,103 to 144,657
GFF4232
GFF4233 - no description, at 144,654 to 145,064
GFF4233
GFF4234 - hypothetical protein, at 145,061 to 145,852
GFF4234
GFF4235 - Hydroxymethylpyrimidine ABC transporter, ATPase component, at 145,849 to 146,667
GFF4235
Position (kb) 144
145
146 Strain fitness (log2 ratio) -1
0
1
2
3 at 143.774 kb on - strand, within GFF4231 at 143.774 kb on - strand, within GFF4231 at 144.033 kb on - strand at 144.304 kb on + strand, within GFF4232 at 144.304 kb on + strand, within GFF4232 at 144.305 kb on - strand, within GFF4232 at 144.511 kb on + strand, within GFF4232 at 144.511 kb on + strand, within GFF4232 at 144.512 kb on - strand, within GFF4232 at 144.512 kb on - strand, within GFF4232 at 144.720 kb on + strand, within GFF4233 at 144.721 kb on - strand, within GFF4233 at 144.786 kb on + strand, within GFF4233 at 144.817 kb on - strand, within GFF4233 at 145.074 kb on + strand at 145.075 kb on - strand at 145.906 kb on + strand at 145.906 kb on + strand at 145.907 kb on - strand at 145.907 kb on - strand at 145.907 kb on - strand at 145.907 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 143,774 - GFF4231 0.74 -0.8 143,774 - GFF4231 0.74 +0.1 144,033 - -0.1 144,304 + GFF4232 0.36 -0.0 144,304 + GFF4232 0.36 -0.3 144,305 - GFF4232 0.36 +0.8 144,511 + GFF4232 0.74 +0.4 144,511 + GFF4232 0.74 +3.3 144,512 - GFF4232 0.74 +1.7 144,512 - GFF4232 0.74 -0.4 144,720 + GFF4233 0.16 -1.2 144,721 - GFF4233 0.16 -0.2 144,786 + GFF4233 0.32 -0.7 144,817 - GFF4233 0.40 -0.7 145,074 + -0.2 145,075 - +1.9 145,906 + -0.5 145,906 + +0.3 145,907 - -0.3 145,907 - -0.2 145,907 - +0.6 145,907 - -0.7
Or see this region's nucleotide sequence