Strain Fitness in Variovorax sp. SCN45 around GFF4066

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4064 and GFF4065 are separated by 138 nucleotidesGFF4065 and GFF4066 are separated by 78 nucleotidesGFF4066 and GFF4067 are separated by 186 nucleotides GFF4064 - no description, at 279,002 to 279,340 GFF4064 GFF4065 - Uncharacterized cysteine-rich DUF326 protein bsYhjQ/STM1261, at 279,479 to 279,808 GFF4065 GFF4066 - Putative type II restriction enzyme NmeDIP (EC 3.1.21.4) (Endonuclease NmeDIP) (R.NmeDIP), at 279,887 to 281,173 GFF4066 GFF4067 - FIG00897050: hypothetical protein, at 281,360 to 283,003 GFF4067 Position (kb) 279 280 281 282Strain fitness (log2 ratio) -1 0 1 2 3at 278.913 kb on - strandat 278.917 kb on + strandat 278.917 kb on + strandat 278.918 kb on - strandat 278.918 kb on - strandat 278.918 kb on - strandat 278.943 kb on - strandat 278.943 kb on - strandat 278.964 kb on - strandat 279.056 kb on + strand, within GFF4064at 279.338 kb on + strandat 279.494 kb on + strandat 279.494 kb on + strandat 279.495 kb on - strandat 279.495 kb on - strandat 279.495 kb on - strandat 279.497 kb on - strandat 279.582 kb on - strand, within GFF4065at 279.678 kb on + strand, within GFF4065at 279.678 kb on + strand, within GFF4065at 279.678 kb on + strand, within GFF4065at 279.678 kb on + strand, within GFF4065at 279.679 kb on - strand, within GFF4065at 279.679 kb on - strand, within GFF4065at 279.679 kb on - strand, within GFF4065at 279.679 kb on - strand, within GFF4065at 279.679 kb on - strand, within GFF4065at 279.679 kb on - strand, within GFF4065at 279.826 kb on + strandat 279.897 kb on + strandat 279.897 kb on + strandat 279.973 kb on - strandat 279.981 kb on + strandat 280.064 kb on + strand, within GFF4066at 280.137 kb on + strand, within GFF4066at 280.137 kb on + strand, within GFF4066at 280.138 kb on - strand, within GFF4066at 280.138 kb on - strand, within GFF4066at 280.294 kb on - strand, within GFF4066at 280.294 kb on - strand, within GFF4066at 280.294 kb on - strand, within GFF4066at 280.621 kb on - strand, within GFF4066at 280.668 kb on + strand, within GFF4066at 280.668 kb on + strand, within GFF4066at 280.668 kb on + strand, within GFF4066at 280.722 kb on + strand, within GFF4066at 280.723 kb on - strand, within GFF4066at 280.723 kb on - strand, within GFF4066at 280.869 kb on + strand, within GFF4066at 280.869 kb on + strand, within GFF4066at 280.870 kb on - strand, within GFF4066at 281.091 kb on + strandat 281.091 kb on + strandat 281.091 kb on + strandat 281.091 kb on + strandat 281.091 kb on + strandat 281.091 kb on + strandat 281.091 kb on + strandat 281.092 kb on - strandat 281.092 kb on - strandat 281.092 kb on - strandat 281.263 kb on - strandat 281.275 kb on - strandat 281.303 kb on - strandat 281.303 kb on - strandat 281.390 kb on - strandat 281.522 kb on + strandat 281.522 kb on + strandat 281.523 kb on - strandat 281.523 kb on - strandat 281.523 kb on - strandat 281.549 kb on + strand, within GFF4067at 281.549 kb on + strand, within GFF4067at 281.549 kb on + strand, within GFF4067at 281.549 kb on + strand, within GFF4067at 281.549 kb on + strand, within GFF4067at 281.549 kb on + strand, within GFF4067at 281.549 kb on + strand, within GFF4067at 281.549 kb on + strand, within GFF4067at 281.549 kb on + strand, within GFF4067at 281.549 kb on + strand, within GFF4067at 281.549 kb on + strand, within GFF4067at 281.549 kb on + strand, within GFF4067at 281.549 kb on + strand, within GFF4067at 281.550 kb on - strand, within GFF4067at 281.550 kb on - strand, within GFF4067at 281.550 kb on - strand, within GFF4067at 281.550 kb on - strand, within GFF4067at 281.550 kb on - strand, within GFF4067at 281.550 kb on - strand, within GFF4067at 281.550 kb on - strand, within GFF4067at 281.550 kb on - strand, within GFF4067at 281.550 kb on - strand, within GFF4067at 281.628 kb on - strand, within GFF4067at 281.628 kb on - strand, within GFF4067at 281.673 kb on - strand, within GFF4067at 281.673 kb on - strand, within GFF4067at 281.673 kb on - strand, within GFF4067at 281.786 kb on + strand, within GFF4067at 281.786 kb on + strand, within GFF4067at 281.786 kb on + strand, within GFF4067at 281.786 kb on + strand, within GFF4067at 281.787 kb on - strand, within GFF4067at 281.787 kb on - strand, within GFF4067at 281.787 kb on - strand, within GFF4067at 281.927 kb on + strand, within GFF4067at 282.083 kb on + strand, within GFF4067at 282.143 kb on + strand, within GFF4067at 282.143 kb on + strand, within GFF4067at 282.144 kb on - strand, within GFF4067at 282.144 kb on - strand, within GFF4067

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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278,913 - -0.1
278,917 + +0.3
278,917 + -0.3
278,918 - -0.2
278,918 - -0.3
278,918 - -0.3
278,943 - -0.5
278,943 - +1.7
278,964 - +0.6
279,056 + GFF4064 0.16 -0.5
279,338 + -0.5
279,494 + -0.2
279,494 + +0.0
279,495 - +0.2
279,495 - +1.2
279,495 - -1.2
279,497 - -0.0
279,582 - GFF4065 0.31 -0.3
279,678 + GFF4065 0.60 -1.3
279,678 + GFF4065 0.60 +0.2
279,678 + GFF4065 0.60 +1.0
279,678 + GFF4065 0.60 -0.2
279,679 - GFF4065 0.61 +0.1
279,679 - GFF4065 0.61 -0.6
279,679 - GFF4065 0.61 -0.3
279,679 - GFF4065 0.61 +0.1
279,679 - GFF4065 0.61 +0.1
279,679 - GFF4065 0.61 -1.0
279,826 + +0.7
279,897 + -0.0
279,897 + -0.7
279,973 - +0.4
279,981 + -0.1
280,064 + GFF4066 0.14 -0.3
280,137 + GFF4066 0.19 +0.2
280,137 + GFF4066 0.19 +0.1
280,138 - GFF4066 0.20 +0.0
280,138 - GFF4066 0.20 +0.0
280,294 - GFF4066 0.32 -0.2
280,294 - GFF4066 0.32 +3.7
280,294 - GFF4066 0.32 -0.4
280,621 - GFF4066 0.57 -0.5
280,668 + GFF4066 0.61 -0.2
280,668 + GFF4066 0.61 -0.6
280,668 + GFF4066 0.61 +0.2
280,722 + GFF4066 0.65 -1.6
280,723 - GFF4066 0.65 -0.2
280,723 - GFF4066 0.65 -0.7
280,869 + GFF4066 0.76 -0.1
280,869 + GFF4066 0.76 -0.4
280,870 - GFF4066 0.76 -0.5
281,091 + -0.4
281,091 + +0.1
281,091 + +0.2
281,091 + +0.5
281,091 + +0.0
281,091 + +0.7
281,091 + -0.4
281,092 - -1.3
281,092 - -0.2
281,092 - +1.4
281,263 - +0.5
281,275 - +1.5
281,303 - +0.9
281,303 - -1.1
281,390 - +0.5
281,522 + +0.9
281,522 + +0.7
281,523 - +1.0
281,523 - +0.2
281,523 - +0.1
281,549 + GFF4067 0.11 +0.1
281,549 + GFF4067 0.11 +0.6
281,549 + GFF4067 0.11 -0.3
281,549 + GFF4067 0.11 -1.0
281,549 + GFF4067 0.11 +0.2
281,549 + GFF4067 0.11 +0.3
281,549 + GFF4067 0.11 +0.1
281,549 + GFF4067 0.11 -0.3
281,549 + GFF4067 0.11 +0.4
281,549 + GFF4067 0.11 +0.1
281,549 + GFF4067 0.11 -1.1
281,549 + GFF4067 0.11 -0.1
281,549 + GFF4067 0.11 -0.0
281,550 - GFF4067 0.12 +0.3
281,550 - GFF4067 0.12 -1.3
281,550 - GFF4067 0.12 -0.6
281,550 - GFF4067 0.12 -0.5
281,550 - GFF4067 0.12 -0.5
281,550 - GFF4067 0.12 -0.9
281,550 - GFF4067 0.12 +1.1
281,550 - GFF4067 0.12 +2.0
281,550 - GFF4067 0.12 +0.2
281,628 - GFF4067 0.16 -0.0
281,628 - GFF4067 0.16 -0.8
281,673 - GFF4067 0.19 +0.8
281,673 - GFF4067 0.19 +0.4
281,673 - GFF4067 0.19 -0.3
281,786 + GFF4067 0.26 -0.8
281,786 + GFF4067 0.26 -0.2
281,786 + GFF4067 0.26 +0.6
281,786 + GFF4067 0.26 -0.3
281,787 - GFF4067 0.26 -0.3
281,787 - GFF4067 0.26 -0.5
281,787 - GFF4067 0.26 +0.6
281,927 + GFF4067 0.34 +0.4
282,083 + GFF4067 0.44 -0.5
282,143 + GFF4067 0.48 +0.2
282,143 + GFF4067 0.48 +0.3
282,144 - GFF4067 0.48 +0.5
282,144 - GFF4067 0.48 -0.9

Or see this region's nucleotide sequence