Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF365 and GFF366 are separated by 80 nucleotides GFF366 and GFF367 overlap by 4 nucleotides
GFF365 - Acyl-CoA dehydrogenase, at 395,712 to 396,983
GFF365
GFF366 - Histone acetyltransferase HPA2 and related acetyltransferases, at 397,064 to 397,558
GFF366
GFF367 - Phosphoglucosamine mutase (EC 5.4.2.10), at 397,555 to 398,892
GFF367
Position (kb) 397
398 Strain fitness (log2 ratio) -2
-1
0
1
2 at 396.216 kb on + strand, within GFF365 at 396.216 kb on + strand, within GFF365 at 396.216 kb on + strand, within GFF365 at 396.216 kb on + strand, within GFF365 at 396.216 kb on + strand, within GFF365 at 396.216 kb on + strand, within GFF365 at 396.216 kb on + strand, within GFF365 at 396.216 kb on + strand, within GFF365 at 396.217 kb on - strand, within GFF365 at 396.217 kb on - strand, within GFF365 at 396.217 kb on - strand, within GFF365 at 396.217 kb on - strand, within GFF365 at 396.217 kb on - strand, within GFF365 at 396.393 kb on + strand, within GFF365 at 396.394 kb on - strand, within GFF365 at 396.394 kb on - strand, within GFF365 at 396.426 kb on + strand, within GFF365 at 396.426 kb on + strand, within GFF365 at 396.426 kb on + strand, within GFF365 at 396.426 kb on + strand, within GFF365 at 396.426 kb on + strand, within GFF365 at 396.427 kb on - strand, within GFF365 at 396.427 kb on - strand, within GFF365 at 396.427 kb on - strand, within GFF365 at 396.427 kb on - strand, within GFF365 at 396.427 kb on - strand, within GFF365 at 396.846 kb on + strand, within GFF365 at 396.846 kb on + strand, within GFF365 at 396.846 kb on + strand, within GFF365 at 396.847 kb on - strand, within GFF365 at 396.847 kb on - strand, within GFF365 at 396.936 kb on + strand at 396.936 kb on + strand at 396.936 kb on + strand at 396.936 kb on + strand at 396.936 kb on + strand at 396.937 kb on - strand at 396.937 kb on - strand at 396.937 kb on - strand at 396.937 kb on - strand at 396.937 kb on - strand at 397.117 kb on - strand, within GFF366 at 397.117 kb on - strand, within GFF366 at 397.140 kb on + strand, within GFF366 at 397.140 kb on + strand, within GFF366 at 397.140 kb on + strand, within GFF366 at 397.140 kb on + strand, within GFF366 at 397.140 kb on + strand, within GFF366 at 397.140 kb on + strand, within GFF366 at 397.140 kb on + strand, within GFF366 at 397.141 kb on - strand, within GFF366 at 397.141 kb on - strand, within GFF366 at 397.141 kb on - strand, within GFF366 at 397.141 kb on - strand, within GFF366 at 397.141 kb on - strand, within GFF366 at 397.141 kb on - strand, within GFF366 at 397.144 kb on + strand, within GFF366 at 397.144 kb on + strand, within GFF366 at 397.144 kb on + strand, within GFF366 at 397.144 kb on + strand, within GFF366 at 397.144 kb on + strand, within GFF366 at 397.145 kb on - strand, within GFF366 at 397.470 kb on + strand, within GFF366 at 397.470 kb on + strand, within GFF366 at 397.470 kb on + strand, within GFF366 at 397.470 kb on + strand, within GFF366 at 397.470 kb on + strand, within GFF366 at 397.471 kb on - strand, within GFF366 at 397.519 kb on - strand at 397.519 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 396,216 + GFF365 0.40 -0.4 396,216 + GFF365 0.40 -0.3 396,216 + GFF365 0.40 -1.1 396,216 + GFF365 0.40 +0.2 396,216 + GFF365 0.40 -0.9 396,216 + GFF365 0.40 +0.9 396,216 + GFF365 0.40 -0.3 396,216 + GFF365 0.40 -0.1 396,217 - GFF365 0.40 -0.5 396,217 - GFF365 0.40 -0.4 396,217 - GFF365 0.40 +0.2 396,217 - GFF365 0.40 +0.4 396,217 - GFF365 0.40 +0.2 396,393 + GFF365 0.54 +0.3 396,394 - GFF365 0.54 -0.4 396,394 - GFF365 0.54 +0.2 396,426 + GFF365 0.56 -1.0 396,426 + GFF365 0.56 +0.6 396,426 + GFF365 0.56 -0.9 396,426 + GFF365 0.56 -0.1 396,426 + GFF365 0.56 +0.8 396,427 - GFF365 0.56 -0.4 396,427 - GFF365 0.56 -0.7 396,427 - GFF365 0.56 +0.4 396,427 - GFF365 0.56 -0.1 396,427 - GFF365 0.56 +0.1 396,846 + GFF365 0.89 -1.1 396,846 + GFF365 0.89 +0.7 396,846 + GFF365 0.89 -0.4 396,847 - GFF365 0.89 +0.1 396,847 - GFF365 0.89 +0.5 396,936 + +0.4 396,936 + +0.5 396,936 + -2.1 396,936 + -0.1 396,936 + -0.4 396,937 - +1.5 396,937 - -0.7 396,937 - -0.4 396,937 - +0.2 396,937 - +2.1 397,117 - GFF366 0.11 +0.9 397,117 - GFF366 0.11 +0.2 397,140 + GFF366 0.15 +0.2 397,140 + GFF366 0.15 -0.8 397,140 + GFF366 0.15 +0.1 397,140 + GFF366 0.15 -0.5 397,140 + GFF366 0.15 -0.3 397,140 + GFF366 0.15 -1.1 397,140 + GFF366 0.15 -0.1 397,141 - GFF366 0.16 +0.3 397,141 - GFF366 0.16 +0.5 397,141 - GFF366 0.16 -1.4 397,141 - GFF366 0.16 -0.5 397,141 - GFF366 0.16 -0.1 397,141 - GFF366 0.16 +0.2 397,144 + GFF366 0.16 -0.2 397,144 + GFF366 0.16 +0.8 397,144 + GFF366 0.16 +0.4 397,144 + GFF366 0.16 +0.1 397,144 + GFF366 0.16 -0.0 397,145 - GFF366 0.16 +0.7 397,470 + GFF366 0.82 -1.1 397,470 + GFF366 0.82 +0.7 397,470 + GFF366 0.82 +1.5 397,470 + GFF366 0.82 -0.4 397,470 + GFF366 0.82 +2.1 397,471 - GFF366 0.82 -0.0 397,519 - -0.2 397,519 - -0.2
Or see this region's nucleotide sequence