Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3653 and GFF3654 are separated by 62 nucleotides GFF3654 and GFF3655 are separated by 106 nucleotides GFF3655 and GFF3656 are separated by 111 nucleotides GFF3656 and GFF3657 are separated by 124 nucleotides
GFF3653 - Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9), at 156,359 to 158,170
GFF3653
GFF3654 - DUF1275 domain-containing protein, at 158,233 to 158,949
GFF3654
GFF3655 - no description, at 159,056 to 159,433
GFF3655
GFF3656 - hypothetical protein, at 159,545 to 160,009
GFF3656
GFF3657 - Mlr5572 protein, at 160,134 to 160,526
GFF3657
Position (kb) 159
160 Strain fitness (log2 ratio) -2
-1
0
1
2 at 158.869 kb on + strand, within GFF3654 at 158.869 kb on + strand, within GFF3654 at 158.870 kb on - strand, within GFF3654 at 158.934 kb on - strand at 158.958 kb on + strand at 158.958 kb on + strand at 158.959 kb on - strand at 159.140 kb on + strand, within GFF3655 at 159.140 kb on + strand, within GFF3655 at 159.140 kb on + strand, within GFF3655 at 159.140 kb on + strand, within GFF3655 at 159.140 kb on + strand, within GFF3655 at 159.140 kb on + strand, within GFF3655 at 159.141 kb on - strand, within GFF3655 at 159.141 kb on - strand, within GFF3655 at 159.141 kb on - strand, within GFF3655 at 159.141 kb on - strand, within GFF3655 at 159.141 kb on - strand, within GFF3655 at 159.141 kb on - strand, within GFF3655 at 159.141 kb on - strand, within GFF3655 at 159.431 kb on + strand at 159.432 kb on - strand at 159.450 kb on + strand at 159.451 kb on - strand at 159.565 kb on + strand at 159.565 kb on + strand at 159.565 kb on + strand at 159.565 kb on + strand at 159.565 kb on + strand at 159.565 kb on + strand at 159.565 kb on + strand at 159.565 kb on + strand at 159.566 kb on - strand at 159.566 kb on - strand at 159.566 kb on - strand at 159.566 kb on - strand at 159.566 kb on - strand at 159.926 kb on + strand, within GFF3656 at 159.926 kb on + strand, within GFF3656 at 159.926 kb on + strand, within GFF3656 at 159.926 kb on + strand, within GFF3656 at 159.926 kb on + strand, within GFF3656 at 159.926 kb on + strand, within GFF3656 at 159.926 kb on + strand, within GFF3656 at 159.926 kb on + strand, within GFF3656 at 159.926 kb on + strand, within GFF3656 at 159.926 kb on + strand, within GFF3656 at 159.926 kb on + strand, within GFF3656 at 159.926 kb on + strand, within GFF3656 at 159.927 kb on - strand, within GFF3656 at 159.927 kb on - strand, within GFF3656 at 159.927 kb on - strand, within GFF3656 at 159.927 kb on - strand, within GFF3656 at 159.927 kb on - strand, within GFF3656 at 159.927 kb on - strand, within GFF3656 at 159.927 kb on - strand, within GFF3656 at 159.927 kb on - strand, within GFF3656 at 159.927 kb on - strand, within GFF3656 at 159.927 kb on - strand, within GFF3656 at 159.927 kb on - strand, within GFF3656 at 160.008 kb on - strand at 160.008 kb on - strand at 160.074 kb on + strand at 160.075 kb on - strand at 160.075 kb on - strand at 160.075 kb on - strand at 160.222 kb on - strand, within GFF3657 at 160.222 kb on - strand, within GFF3657 at 160.230 kb on + strand, within GFF3657 at 160.230 kb on + strand, within GFF3657 at 160.293 kb on + strand, within GFF3657 at 160.326 kb on + strand, within GFF3657 at 160.326 kb on + strand, within GFF3657 at 160.326 kb on + strand, within GFF3657 at 160.326 kb on + strand, within GFF3657 at 160.326 kb on + strand, within GFF3657 at 160.327 kb on - strand, within GFF3657 at 160.327 kb on - strand, within GFF3657 at 160.327 kb on - strand, within GFF3657 at 160.327 kb on - strand, within GFF3657 at 160.344 kb on + strand, within GFF3657 at 160.344 kb on + strand, within GFF3657 at 160.344 kb on + strand, within GFF3657 at 160.344 kb on + strand, within GFF3657 at 160.344 kb on + strand, within GFF3657 at 160.344 kb on + strand, within GFF3657 at 160.345 kb on - strand, within GFF3657 at 160.345 kb on - strand, within GFF3657 at 160.345 kb on - strand, within GFF3657 at 160.345 kb on - strand, within GFF3657 at 160.345 kb on - strand, within GFF3657 at 160.345 kb on - strand, within GFF3657 at 160.345 kb on - strand, within GFF3657 at 160.345 kb on - strand, within GFF3657
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 158,869 + GFF3654 0.89 +0.4 158,869 + GFF3654 0.89 -0.3 158,870 - GFF3654 0.89 -0.1 158,934 - -0.5 158,958 + -0.1 158,958 + +0.7 158,959 - -0.1 159,140 + GFF3655 0.22 +0.6 159,140 + GFF3655 0.22 +0.2 159,140 + GFF3655 0.22 +0.5 159,140 + GFF3655 0.22 -0.2 159,140 + GFF3655 0.22 +0.4 159,140 + GFF3655 0.22 -0.4 159,141 - GFF3655 0.22 +1.5 159,141 - GFF3655 0.22 +1.0 159,141 - GFF3655 0.22 +0.0 159,141 - GFF3655 0.22 -0.2 159,141 - GFF3655 0.22 +0.0 159,141 - GFF3655 0.22 +0.1 159,141 - GFF3655 0.22 +1.2 159,431 + +0.8 159,432 - -0.1 159,450 + +0.1 159,451 - -0.2 159,565 + -0.2 159,565 + -1.4 159,565 + -0.8 159,565 + +0.1 159,565 + +0.6 159,565 + -0.2 159,565 + -1.3 159,565 + -0.3 159,566 - -0.5 159,566 - +0.9 159,566 - +0.4 159,566 - -1.3 159,566 - +1.3 159,926 + GFF3656 0.82 -0.1 159,926 + GFF3656 0.82 -1.9 159,926 + GFF3656 0.82 +0.2 159,926 + GFF3656 0.82 +0.4 159,926 + GFF3656 0.82 -0.0 159,926 + GFF3656 0.82 -0.7 159,926 + GFF3656 0.82 -0.3 159,926 + GFF3656 0.82 -0.1 159,926 + GFF3656 0.82 -1.4 159,926 + GFF3656 0.82 -0.3 159,926 + GFF3656 0.82 +0.8 159,926 + GFF3656 0.82 +1.5 159,927 - GFF3656 0.82 +0.0 159,927 - GFF3656 0.82 +1.0 159,927 - GFF3656 0.82 -0.1 159,927 - GFF3656 0.82 -1.2 159,927 - GFF3656 0.82 -0.4 159,927 - GFF3656 0.82 -0.7 159,927 - GFF3656 0.82 -0.3 159,927 - GFF3656 0.82 -1.2 159,927 - GFF3656 0.82 -1.6 159,927 - GFF3656 0.82 -0.6 159,927 - GFF3656 0.82 -0.1 160,008 - +0.8 160,008 - -0.4 160,074 + +0.0 160,075 - +0.8 160,075 - -0.3 160,075 - -0.5 160,222 - GFF3657 0.22 +0.2 160,222 - GFF3657 0.22 +0.1 160,230 + GFF3657 0.24 +0.3 160,230 + GFF3657 0.24 +0.9 160,293 + GFF3657 0.40 -0.3 160,326 + GFF3657 0.49 -0.5 160,326 + GFF3657 0.49 -0.6 160,326 + GFF3657 0.49 -0.8 160,326 + GFF3657 0.49 +0.1 160,326 + GFF3657 0.49 -1.2 160,327 - GFF3657 0.49 -1.5 160,327 - GFF3657 0.49 -1.6 160,327 - GFF3657 0.49 +0.3 160,327 - GFF3657 0.49 +0.6 160,344 + GFF3657 0.53 +0.1 160,344 + GFF3657 0.53 -0.5 160,344 + GFF3657 0.53 -0.2 160,344 + GFF3657 0.53 -0.4 160,344 + GFF3657 0.53 +1.8 160,344 + GFF3657 0.53 -0.2 160,345 - GFF3657 0.54 -0.8 160,345 - GFF3657 0.54 +2.0 160,345 - GFF3657 0.54 -1.7 160,345 - GFF3657 0.54 -0.3 160,345 - GFF3657 0.54 +0.4 160,345 - GFF3657 0.54 -0.7 160,345 - GFF3657 0.54 +0.2 160,345 - GFF3657 0.54 -0.2
Or see this region's nucleotide sequence