Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3525 and GFF3526 overlap by 4 nucleotides GFF3526 and GFF3527 overlap by 4 nucleotides GFF3527 and GFF3528 are separated by 73 nucleotides
GFF3525 - Protein tyrosine/serine phosphatase, at 31,581 to 32,117
GFF3525
GFF3526 - hypothetical protein, at 32,114 to 32,608
GFF3526
GFF3527 - UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase, at 32,605 to 33,750
GFF3527
GFF3528 - Nicotinamide phosphoribosyltransferase (EC 2.4.2.12), at 33,824 to 35,269
GFF3528
Position (kb) 32
33
34 Strain fitness (log2 ratio) -2
-1
0
1
2 at 31.654 kb on + strand, within GFF3525 at 31.684 kb on + strand, within GFF3525 at 31.684 kb on + strand, within GFF3525 at 31.753 kb on + strand, within GFF3525 at 31.754 kb on - strand, within GFF3525 at 31.754 kb on - strand, within GFF3525 at 32.409 kb on + strand, within GFF3526 at 32.410 kb on - strand, within GFF3526 at 32.416 kb on - strand, within GFF3526 at 32.563 kb on - strand at 32.733 kb on - strand, within GFF3527 at 32.733 kb on - strand, within GFF3527 at 32.733 kb on - strand, within GFF3527 at 32.733 kb on - strand, within GFF3527 at 32.990 kb on + strand, within GFF3527 at 32.991 kb on - strand, within GFF3527 at 32.991 kb on - strand, within GFF3527 at 32.991 kb on - strand, within GFF3527 at 33.329 kb on + strand, within GFF3527 at 33.330 kb on - strand, within GFF3527 at 33.545 kb on + strand, within GFF3527 at 33.546 kb on - strand, within GFF3527 at 33.546 kb on - strand, within GFF3527 at 33.584 kb on + strand, within GFF3527 at 33.584 kb on + strand, within GFF3527 at 33.584 kb on + strand, within GFF3527 at 33.585 kb on - strand, within GFF3527 at 33.585 kb on - strand, within GFF3527 at 33.585 kb on - strand, within GFF3527 at 33.585 kb on - strand, within GFF3527 at 33.585 kb on - strand, within GFF3527 at 33.585 kb on - strand, within GFF3527 at 33.585 kb on - strand, within GFF3527 at 33.585 kb on - strand, within GFF3527 at 33.585 kb on - strand, within GFF3527 at 33.585 kb on - strand, within GFF3527 at 33.596 kb on + strand, within GFF3527 at 33.596 kb on + strand, within GFF3527 at 33.773 kb on + strand at 33.773 kb on + strand at 33.774 kb on - strand at 33.825 kb on + strand at 33.825 kb on + strand at 33.825 kb on + strand at 34.062 kb on + strand, within GFF3528 at 34.063 kb on - strand, within GFF3528 at 34.063 kb on - strand, within GFF3528 at 34.452 kb on + strand, within GFF3528 at 34.452 kb on + strand, within GFF3528 at 34.452 kb on + strand, within GFF3528 at 34.452 kb on + strand, within GFF3528 at 34.452 kb on + strand, within GFF3528 at 34.452 kb on + strand, within GFF3528 at 34.452 kb on + strand, within GFF3528 at 34.452 kb on + strand, within GFF3528 at 34.453 kb on - strand, within GFF3528 at 34.453 kb on - strand, within GFF3528 at 34.453 kb on - strand, within GFF3528 at 34.453 kb on - strand, within GFF3528 at 34.453 kb on - strand, within GFF3528 at 34.453 kb on - strand, within GFF3528 at 34.453 kb on - strand, within GFF3528 at 34.515 kb on + strand, within GFF3528 at 34.516 kb on - strand, within GFF3528 at 34.603 kb on - strand, within GFF3528 at 34.603 kb on - strand, within GFF3528 at 34.603 kb on - strand, within GFF3528 at 34.603 kb on - strand, within GFF3528 at 34.605 kb on + strand, within GFF3528
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 31,654 + GFF3525 0.14 +0.2 31,684 + GFF3525 0.19 -0.2 31,684 + GFF3525 0.19 +0.3 31,753 + GFF3525 0.32 -0.6 31,754 - GFF3525 0.32 -0.2 31,754 - GFF3525 0.32 +0.8 32,409 + GFF3526 0.60 -1.1 32,410 - GFF3526 0.60 -0.9 32,416 - GFF3526 0.61 +0.0 32,563 - -0.4 32,733 - GFF3527 0.11 +0.2 32,733 - GFF3527 0.11 -0.4 32,733 - GFF3527 0.11 +0.5 32,733 - GFF3527 0.11 -0.0 32,990 + GFF3527 0.34 -0.6 32,991 - GFF3527 0.34 +1.2 32,991 - GFF3527 0.34 -0.7 32,991 - GFF3527 0.34 +1.3 33,329 + GFF3527 0.63 -0.1 33,330 - GFF3527 0.63 -0.5 33,545 + GFF3527 0.82 +0.4 33,546 - GFF3527 0.82 +1.8 33,546 - GFF3527 0.82 -0.1 33,584 + GFF3527 0.85 -0.2 33,584 + GFF3527 0.85 -0.6 33,584 + GFF3527 0.85 +0.2 33,585 - GFF3527 0.86 -0.7 33,585 - GFF3527 0.86 -0.2 33,585 - GFF3527 0.86 -0.2 33,585 - GFF3527 0.86 -0.4 33,585 - GFF3527 0.86 -0.8 33,585 - GFF3527 0.86 -0.1 33,585 - GFF3527 0.86 +1.2 33,585 - GFF3527 0.86 +0.6 33,585 - GFF3527 0.86 -0.1 33,585 - GFF3527 0.86 +1.8 33,596 + GFF3527 0.86 +0.4 33,596 + GFF3527 0.86 +0.0 33,773 + -0.3 33,773 + +0.4 33,774 - -0.3 33,825 + +0.5 33,825 + -1.1 33,825 + +0.9 34,062 + GFF3528 0.16 -1.1 34,063 - GFF3528 0.17 +0.3 34,063 - GFF3528 0.17 -2.0 34,452 + GFF3528 0.43 -0.2 34,452 + GFF3528 0.43 +0.9 34,452 + GFF3528 0.43 -0.5 34,452 + GFF3528 0.43 -0.8 34,452 + GFF3528 0.43 -0.3 34,452 + GFF3528 0.43 +0.3 34,452 + GFF3528 0.43 +0.4 34,452 + GFF3528 0.43 -0.6 34,453 - GFF3528 0.43 -0.9 34,453 - GFF3528 0.43 +0.1 34,453 - GFF3528 0.43 +0.4 34,453 - GFF3528 0.43 -0.4 34,453 - GFF3528 0.43 -0.1 34,453 - GFF3528 0.43 -1.3 34,453 - GFF3528 0.43 -0.0 34,515 + GFF3528 0.48 +0.2 34,516 - GFF3528 0.48 -0.8 34,603 - GFF3528 0.54 +0.2 34,603 - GFF3528 0.54 -0.3 34,603 - GFF3528 0.54 +0.2 34,603 - GFF3528 0.54 +1.5 34,605 + GFF3528 0.54 +0.0
Or see this region's nucleotide sequence