Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3347 and GFF3348 are separated by 4 nucleotides GFF3348 and GFF3349 are separated by 160 nucleotides GFF3349 and GFF3350 are separated by 3 nucleotides
GFF3347 - Adenylate cyclase (EC 4.6.1.1), at 170,036 to 170,557
GFF3347
GFF3348 - Putative lipase, at 170,562 to 171,203
GFF3348
GFF3349 - Branched-chain amino acid ABC transporter, substrate-binding protein LivJ (TC 3.A.1.4.1), at 171,364 to 172,545
GFF3349
GFF3350 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 172,549 to 174,378
GFF3350
Position (kb) 171
172
173 Strain fitness (log2 ratio) -2
-1
0
1
2 at 170.528 kb on + strand at 170.529 kb on - strand at 170.618 kb on - strand at 170.680 kb on + strand, within GFF3348 at 170.680 kb on + strand, within GFF3348 at 170.681 kb on - strand, within GFF3348 at 170.681 kb on - strand, within GFF3348 at 170.728 kb on + strand, within GFF3348 at 170.729 kb on - strand, within GFF3348 at 170.729 kb on - strand, within GFF3348 at 170.729 kb on - strand, within GFF3348 at 170.729 kb on - strand, within GFF3348 at 170.729 kb on - strand, within GFF3348 at 170.917 kb on + strand, within GFF3348 at 170.918 kb on - strand, within GFF3348 at 171.217 kb on + strand at 171.218 kb on - strand at 171.269 kb on + strand at 171.269 kb on + strand at 171.410 kb on + strand at 171.518 kb on - strand, within GFF3349 at 171.518 kb on - strand, within GFF3349 at 171.601 kb on + strand, within GFF3349 at 171.601 kb on + strand, within GFF3349 at 171.733 kb on + strand, within GFF3349 at 171.766 kb on - strand, within GFF3349 at 171.802 kb on + strand, within GFF3349 at 171.802 kb on + strand, within GFF3349 at 171.802 kb on + strand, within GFF3349 at 171.803 kb on - strand, within GFF3349 at 171.803 kb on - strand, within GFF3349 at 171.899 kb on - strand, within GFF3349 at 171.988 kb on + strand, within GFF3349 at 172.069 kb on + strand, within GFF3349 at 172.070 kb on - strand, within GFF3349 at 172.070 kb on - strand, within GFF3349 at 172.150 kb on + strand, within GFF3349 at 172.151 kb on - strand, within GFF3349 at 172.151 kb on - strand, within GFF3349 at 172.274 kb on - strand, within GFF3349 at 172.274 kb on - strand, within GFF3349 at 172.274 kb on - strand, within GFF3349 at 172.303 kb on + strand, within GFF3349 at 172.325 kb on - strand, within GFF3349 at 172.391 kb on - strand, within GFF3349 at 172.573 kb on + strand at 172.574 kb on - strand at 172.606 kb on + strand at 172.607 kb on - strand at 172.682 kb on - strand at 172.682 kb on - strand at 172.696 kb on + strand at 172.697 kb on - strand at 172.697 kb on - strand at 172.720 kb on + strand at 172.721 kb on - strand at 173.182 kb on + strand, within GFF3350 at 173.182 kb on + strand, within GFF3350 at 173.182 kb on + strand, within GFF3350 at 173.182 kb on + strand, within GFF3350 at 173.182 kb on + strand, within GFF3350 at 173.182 kb on + strand, within GFF3350 at 173.182 kb on + strand, within GFF3350 at 173.182 kb on + strand, within GFF3350 at 173.182 kb on + strand, within GFF3350 at 173.182 kb on + strand, within GFF3350 at 173.182 kb on + strand, within GFF3350 at 173.182 kb on + strand, within GFF3350 at 173.182 kb on + strand, within GFF3350 at 173.182 kb on + strand, within GFF3350 at 173.183 kb on - strand, within GFF3350 at 173.183 kb on - strand, within GFF3350 at 173.183 kb on - strand, within GFF3350 at 173.183 kb on - strand, within GFF3350 at 173.183 kb on - strand, within GFF3350 at 173.183 kb on - strand, within GFF3350 at 173.183 kb on - strand, within GFF3350 at 173.183 kb on - strand, within GFF3350 at 173.183 kb on - strand, within GFF3350 at 173.183 kb on - strand, within GFF3350 at 173.185 kb on + strand, within GFF3350 at 173.185 kb on + strand, within GFF3350 at 173.186 kb on - strand, within GFF3350 at 173.186 kb on - strand, within GFF3350 at 173.315 kb on - strand, within GFF3350 at 173.315 kb on - strand, within GFF3350 at 173.378 kb on + strand, within GFF3350 at 173.378 kb on + strand, within GFF3350 at 173.545 kb on + strand, within GFF3350
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 170,528 + -0.6 170,529 - +0.1 170,618 - +0.4 170,680 + GFF3348 0.18 -0.6 170,680 + GFF3348 0.18 -2.5 170,681 - GFF3348 0.19 +0.6 170,681 - GFF3348 0.19 +0.1 170,728 + GFF3348 0.26 +0.2 170,729 - GFF3348 0.26 -0.4 170,729 - GFF3348 0.26 -0.3 170,729 - GFF3348 0.26 -1.6 170,729 - GFF3348 0.26 +0.1 170,729 - GFF3348 0.26 -0.2 170,917 + GFF3348 0.55 -0.7 170,918 - GFF3348 0.55 -0.3 171,217 + +0.0 171,218 - -1.0 171,269 + -0.9 171,269 + -0.7 171,410 + +0.4 171,518 - GFF3349 0.13 -0.6 171,518 - GFF3349 0.13 -1.3 171,601 + GFF3349 0.20 -0.4 171,601 + GFF3349 0.20 -1.3 171,733 + GFF3349 0.31 +1.0 171,766 - GFF3349 0.34 +0.8 171,802 + GFF3349 0.37 -0.8 171,802 + GFF3349 0.37 -0.9 171,802 + GFF3349 0.37 +0.4 171,803 - GFF3349 0.37 +1.0 171,803 - GFF3349 0.37 -0.2 171,899 - GFF3349 0.45 -0.1 171,988 + GFF3349 0.53 -0.6 172,069 + GFF3349 0.60 -0.2 172,070 - GFF3349 0.60 -0.1 172,070 - GFF3349 0.60 -0.6 172,150 + GFF3349 0.66 +0.1 172,151 - GFF3349 0.67 -0.6 172,151 - GFF3349 0.67 -0.1 172,274 - GFF3349 0.77 -0.4 172,274 - GFF3349 0.77 +0.1 172,274 - GFF3349 0.77 -0.7 172,303 + GFF3349 0.79 +2.2 172,325 - GFF3349 0.81 -1.7 172,391 - GFF3349 0.87 -1.1 172,573 + -0.4 172,574 - -0.0 172,606 + -0.4 172,607 - +0.1 172,682 - +0.8 172,682 - -0.1 172,696 + -0.5 172,697 - -1.0 172,697 - +0.9 172,720 + +0.3 172,721 - +0.1 173,182 + GFF3350 0.35 +0.0 173,182 + GFF3350 0.35 +1.2 173,182 + GFF3350 0.35 -0.2 173,182 + GFF3350 0.35 +0.4 173,182 + GFF3350 0.35 -0.2 173,182 + GFF3350 0.35 -0.3 173,182 + GFF3350 0.35 +0.6 173,182 + GFF3350 0.35 -0.9 173,182 + GFF3350 0.35 +0.8 173,182 + GFF3350 0.35 +1.0 173,182 + GFF3350 0.35 -0.3 173,182 + GFF3350 0.35 -0.3 173,182 + GFF3350 0.35 -0.5 173,182 + GFF3350 0.35 -0.6 173,183 - GFF3350 0.35 -0.3 173,183 - GFF3350 0.35 -0.6 173,183 - GFF3350 0.35 -0.2 173,183 - GFF3350 0.35 +0.8 173,183 - GFF3350 0.35 -0.5 173,183 - GFF3350 0.35 -0.4 173,183 - GFF3350 0.35 -0.2 173,183 - GFF3350 0.35 +0.5 173,183 - GFF3350 0.35 -0.0 173,183 - GFF3350 0.35 +0.8 173,185 + GFF3350 0.35 -0.8 173,185 + GFF3350 0.35 -1.2 173,186 - GFF3350 0.35 -0.7 173,186 - GFF3350 0.35 -0.3 173,315 - GFF3350 0.42 -1.3 173,315 - GFF3350 0.42 -0.1 173,378 + GFF3350 0.45 -0.0 173,378 + GFF3350 0.45 -1.6 173,545 + GFF3350 0.54 +0.6
Or see this region's nucleotide sequence