Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3317 and GFF3318 are separated by 10 nucleotides GFF3318 and GFF3319 are separated by 60 nucleotides GFF3319 and GFF3320 are separated by 35 nucleotides
GFF3317 - Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4), at 143,315 to 145,552
GFF3317
GFF3318 - KEGG: putative acetyltransferase , at 145,563 to 146,045
GFF3318
GFF3319 - Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase), at 146,106 to 147,236
GFF3319
GFF3320 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 147,272 to 148,555
GFF3320
Position (kb) 146
147
148 Strain fitness (log2 ratio) -1
0
1
2 at 145.137 kb on - strand, within GFF3317 at 145.424 kb on + strand at 145.424 kb on + strand at 145.424 kb on + strand at 145.424 kb on + strand at 145.425 kb on - strand at 145.440 kb on + strand at 145.625 kb on - strand, within GFF3318 at 145.625 kb on - strand, within GFF3318 at 145.669 kb on + strand, within GFF3318 at 145.669 kb on + strand, within GFF3318 at 145.861 kb on + strand, within GFF3318 at 145.862 kb on - strand, within GFF3318 at 145.892 kb on - strand, within GFF3318 at 145.928 kb on - strand, within GFF3318 at 145.964 kb on - strand, within GFF3318 at 145.973 kb on - strand, within GFF3318 at 145.996 kb on + strand, within GFF3318 at 145.996 kb on + strand, within GFF3318 at 145.996 kb on + strand, within GFF3318 at 145.997 kb on - strand at 145.997 kb on - strand at 145.997 kb on - strand at 145.997 kb on - strand at 145.997 kb on - strand at 145.997 kb on - strand at 145.997 kb on - strand at 146.082 kb on + strand at 146.083 kb on - strand at 146.083 kb on - strand at 146.083 kb on - strand at 146.503 kb on + strand, within GFF3319 at 146.504 kb on - strand, within GFF3319 at 146.560 kb on + strand, within GFF3319 at 146.591 kb on + strand, within GFF3319 at 146.592 kb on - strand, within GFF3319 at 146.610 kb on + strand, within GFF3319 at 146.610 kb on + strand, within GFF3319 at 146.610 kb on + strand, within GFF3319 at 146.611 kb on - strand, within GFF3319 at 146.611 kb on - strand, within GFF3319 at 146.611 kb on - strand, within GFF3319 at 146.611 kb on - strand, within GFF3319 at 146.629 kb on + strand, within GFF3319 at 146.645 kb on - strand, within GFF3319 at 146.645 kb on - strand, within GFF3319 at 146.645 kb on - strand, within GFF3319 at 146.749 kb on + strand, within GFF3319 at 146.750 kb on - strand, within GFF3319 at 146.818 kb on + strand, within GFF3319 at 146.818 kb on + strand, within GFF3319 at 146.818 kb on + strand, within GFF3319 at 146.818 kb on + strand, within GFF3319 at 146.818 kb on + strand, within GFF3319 at 146.819 kb on - strand, within GFF3319 at 146.819 kb on - strand, within GFF3319 at 146.819 kb on - strand, within GFF3319 at 146.953 kb on + strand, within GFF3319 at 146.953 kb on + strand, within GFF3319 at 147.043 kb on + strand, within GFF3319 at 147.044 kb on - strand, within GFF3319 at 147.055 kb on + strand, within GFF3319 at 147.145 kb on + strand at 147.146 kb on - strand at 147.146 kb on - strand at 148.143 kb on + strand, within GFF3320 at 148.144 kb on - strand, within GFF3320
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 145,137 - GFF3317 0.81 -1.3 145,424 + +0.8 145,424 + +0.4 145,424 + -0.6 145,424 + +0.3 145,425 - +0.0 145,440 + -0.9 145,625 - GFF3318 0.13 -0.1 145,625 - GFF3318 0.13 +0.4 145,669 + GFF3318 0.22 +0.2 145,669 + GFF3318 0.22 +1.0 145,861 + GFF3318 0.62 -0.0 145,862 - GFF3318 0.62 +0.0 145,892 - GFF3318 0.68 -0.8 145,928 - GFF3318 0.76 -0.6 145,964 - GFF3318 0.83 +0.1 145,973 - GFF3318 0.85 +1.2 145,996 + GFF3318 0.90 -0.5 145,996 + GFF3318 0.90 -0.0 145,996 + GFF3318 0.90 -0.5 145,997 - +0.4 145,997 - -0.3 145,997 - -0.0 145,997 - -0.3 145,997 - +0.5 145,997 - -0.2 145,997 - -0.5 146,082 + -0.6 146,083 - -0.7 146,083 - -0.4 146,083 - +1.3 146,503 + GFF3319 0.35 -1.0 146,504 - GFF3319 0.35 +0.2 146,560 + GFF3319 0.40 -0.5 146,591 + GFF3319 0.43 -0.1 146,592 - GFF3319 0.43 +0.4 146,610 + GFF3319 0.45 +0.0 146,610 + GFF3319 0.45 -0.1 146,610 + GFF3319 0.45 +0.4 146,611 - GFF3319 0.45 +0.7 146,611 - GFF3319 0.45 -1.4 146,611 - GFF3319 0.45 -0.0 146,611 - GFF3319 0.45 +0.1 146,629 + GFF3319 0.46 +0.8 146,645 - GFF3319 0.48 -0.9 146,645 - GFF3319 0.48 -0.4 146,645 - GFF3319 0.48 -0.6 146,749 + GFF3319 0.57 +0.8 146,750 - GFF3319 0.57 +1.8 146,818 + GFF3319 0.63 +0.1 146,818 + GFF3319 0.63 -0.0 146,818 + GFF3319 0.63 -0.9 146,818 + GFF3319 0.63 -0.3 146,818 + GFF3319 0.63 -0.3 146,819 - GFF3319 0.63 -0.5 146,819 - GFF3319 0.63 +0.4 146,819 - GFF3319 0.63 +0.5 146,953 + GFF3319 0.75 +0.5 146,953 + GFF3319 0.75 +0.8 147,043 + GFF3319 0.83 +0.2 147,044 - GFF3319 0.83 -0.6 147,055 + GFF3319 0.84 +1.1 147,145 + +0.5 147,146 - -0.2 147,146 - -0.2 148,143 + GFF3320 0.68 -0.4 148,144 - GFF3320 0.68 +0.8
Or see this region's nucleotide sequence