Strain Fitness in Variovorax sp. SCN45 around GFF328

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF327 and GFF328 are separated by 44 nucleotidesGFF328 and GFF329 overlap by 4 nucleotides GFF327 - 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9), at 361,222 to 362,199 GFF327 GFF328 - hypothetical protein, at 362,244 to 362,939 GFF328 GFF329 - Nucleoside ABC transporter, ATP-binding protein, at 362,936 to 364,537 GFF329 Position (kb) 362 363Strain fitness (log2 ratio) -2 -1 0 1 2 3at 361.324 kb on + strand, within GFF327at 361.324 kb on + strand, within GFF327at 361.324 kb on + strand, within GFF327at 361.324 kb on + strand, within GFF327at 361.325 kb on - strand, within GFF327at 361.666 kb on + strand, within GFF327at 361.667 kb on - strand, within GFF327at 361.667 kb on - strand, within GFF327at 361.708 kb on + strand, within GFF327at 361.708 kb on + strand, within GFF327at 361.708 kb on + strand, within GFF327at 361.709 kb on - strand, within GFF327at 361.709 kb on - strand, within GFF327at 361.709 kb on - strand, within GFF327at 361.975 kb on + strand, within GFF327at 361.984 kb on + strand, within GFF327at 361.984 kb on + strand, within GFF327at 361.984 kb on + strand, within GFF327at 361.984 kb on + strand, within GFF327at 361.984 kb on + strand, within GFF327at 361.984 kb on + strand, within GFF327at 361.985 kb on - strand, within GFF327at 361.985 kb on - strand, within GFF327at 361.985 kb on - strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.990 kb on + strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 361.991 kb on - strand, within GFF327at 362.050 kb on + strand, within GFF327at 362.051 kb on - strand, within GFF327at 362.051 kb on - strand, within GFF327at 362.068 kb on + strand, within GFF327at 362.068 kb on + strand, within GFF327at 362.068 kb on + strand, within GFF327at 362.068 kb on + strand, within GFF327at 362.068 kb on + strand, within GFF327at 362.068 kb on + strand, within GFF327at 362.068 kb on + strand, within GFF327at 362.069 kb on - strand, within GFF327at 362.069 kb on - strand, within GFF327at 362.069 kb on - strand, within GFF327at 362.227 kb on + strandat 362.228 kb on - strandat 362.320 kb on - strand, within GFF328at 362.343 kb on + strand, within GFF328at 362.344 kb on - strand, within GFF328at 362.732 kb on - strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.748 kb on + strand, within GFF328at 362.749 kb on - strand, within GFF328at 362.749 kb on - strand, within GFF328at 362.749 kb on - strand, within GFF328at 362.749 kb on - strand, within GFF328at 362.749 kb on - strand, within GFF328at 362.749 kb on - strand, within GFF328at 362.749 kb on - strand, within GFF328at 362.749 kb on - strand, within GFF328at 362.749 kb on - strand, within GFF328at 362.795 kb on + strand, within GFF328at 362.889 kb on - strandat 363.098 kb on + strand, within GFF329at 363.098 kb on + strand, within GFF329at 363.098 kb on + strand, within GFF329at 363.098 kb on + strand, within GFF329at 363.098 kb on + strand, within GFF329at 363.098 kb on + strand, within GFF329at 363.099 kb on - strand, within GFF329at 363.099 kb on - strand, within GFF329at 363.099 kb on - strand, within GFF329at 363.099 kb on - strand, within GFF329at 363.405 kb on - strand, within GFF329

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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361,324 + GFF327 0.10 -0.1
361,324 + GFF327 0.10 -0.8
361,324 + GFF327 0.10 -0.1
361,324 + GFF327 0.10 -0.1
361,325 - GFF327 0.11 -0.0
361,666 + GFF327 0.45 -0.8
361,667 - GFF327 0.46 +1.0
361,667 - GFF327 0.46 -0.8
361,708 + GFF327 0.50 -1.5
361,708 + GFF327 0.50 -0.7
361,708 + GFF327 0.50 +0.2
361,709 - GFF327 0.50 -0.3
361,709 - GFF327 0.50 +0.0
361,709 - GFF327 0.50 +0.4
361,975 + GFF327 0.77 +0.2
361,984 + GFF327 0.78 -0.6
361,984 + GFF327 0.78 +0.0
361,984 + GFF327 0.78 +0.5
361,984 + GFF327 0.78 -0.9
361,984 + GFF327 0.78 +0.4
361,984 + GFF327 0.78 +0.7
361,985 - GFF327 0.78 -0.9
361,985 - GFF327 0.78 -1.1
361,985 - GFF327 0.78 +0.2
361,990 + GFF327 0.79 -0.1
361,990 + GFF327 0.79 -0.1
361,990 + GFF327 0.79 -0.5
361,990 + GFF327 0.79 -0.7
361,990 + GFF327 0.79 +1.1
361,990 + GFF327 0.79 +0.3
361,990 + GFF327 0.79 +0.6
361,990 + GFF327 0.79 +0.3
361,990 + GFF327 0.79 -0.3
361,990 + GFF327 0.79 -0.6
361,990 + GFF327 0.79 +0.3
361,990 + GFF327 0.79 -1.8
361,990 + GFF327 0.79 -0.3
361,990 + GFF327 0.79 -0.4
361,990 + GFF327 0.79 -0.5
361,991 - GFF327 0.79 -1.1
361,991 - GFF327 0.79 -0.5
361,991 - GFF327 0.79 +2.8
361,991 - GFF327 0.79 -1.0
361,991 - GFF327 0.79 -0.2
361,991 - GFF327 0.79 +0.7
361,991 - GFF327 0.79 -0.7
361,991 - GFF327 0.79 +1.2
361,991 - GFF327 0.79 -0.3
361,991 - GFF327 0.79 +0.7
361,991 - GFF327 0.79 -0.8
362,050 + GFF327 0.85 -0.5
362,051 - GFF327 0.85 -0.4
362,051 - GFF327 0.85 +0.5
362,068 + GFF327 0.87 +0.7
362,068 + GFF327 0.87 -0.7
362,068 + GFF327 0.87 -0.8
362,068 + GFF327 0.87 -0.3
362,068 + GFF327 0.87 +0.3
362,068 + GFF327 0.87 -0.8
362,068 + GFF327 0.87 +0.9
362,069 - GFF327 0.87 +0.5
362,069 - GFF327 0.87 -0.6
362,069 - GFF327 0.87 +0.3
362,227 + +0.0
362,228 - -1.0
362,320 - GFF328 0.11 -1.1
362,343 + GFF328 0.14 +1.7
362,344 - GFF328 0.14 +0.6
362,732 - GFF328 0.70 +0.8
362,748 + GFF328 0.72 +0.4
362,748 + GFF328 0.72 -0.5
362,748 + GFF328 0.72 -1.4
362,748 + GFF328 0.72 -0.1
362,748 + GFF328 0.72 -0.3
362,748 + GFF328 0.72 -2.5
362,748 + GFF328 0.72 -0.1
362,748 + GFF328 0.72 +1.1
362,748 + GFF328 0.72 -0.2
362,748 + GFF328 0.72 +0.6
362,748 + GFF328 0.72 -0.1
362,748 + GFF328 0.72 -1.2
362,749 - GFF328 0.73 -0.3
362,749 - GFF328 0.73 -0.3
362,749 - GFF328 0.73 +1.0
362,749 - GFF328 0.73 +0.0
362,749 - GFF328 0.73 +0.3
362,749 - GFF328 0.73 -0.8
362,749 - GFF328 0.73 +0.2
362,749 - GFF328 0.73 -0.4
362,749 - GFF328 0.73 +1.1
362,795 + GFF328 0.79 +0.4
362,889 - -1.3
363,098 + GFF329 0.10 +0.9
363,098 + GFF329 0.10 +0.2
363,098 + GFF329 0.10 +0.0
363,098 + GFF329 0.10 -2.2
363,098 + GFF329 0.10 -0.4
363,098 + GFF329 0.10 -0.0
363,099 - GFF329 0.10 -1.3
363,099 - GFF329 0.10 -0.7
363,099 - GFF329 0.10 +0.3
363,099 - GFF329 0.10 -0.5
363,405 - GFF329 0.29 +0.3

Or see this region's nucleotide sequence