Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF308 and GFF309 overlap by 4 nucleotides GFF309 and GFF310 overlap by 4 nucleotides GFF310 and GFF311 overlap by 4 nucleotides
GFF308 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 341,331 to 342,062
GFF308
GFF309 - 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.59), at 342,059 to 342,532
GFF309
GFF310 - FIG025233: SAM-dependent methyltransferases, at 342,529 to 343,305
GFF310
GFF311 - Polysaccharide deacetylase, at 343,302 to 344,144
GFF311
Position (kb) 342
343 Strain fitness (log2 ratio) -1
0
1 at 341.374 kb on + strand at 341.374 kb on + strand at 341.602 kb on + strand, within GFF308 at 341.602 kb on + strand, within GFF308 at 341.602 kb on + strand, within GFF308 at 341.602 kb on + strand, within GFF308 at 341.602 kb on + strand, within GFF308 at 341.602 kb on + strand, within GFF308 at 341.602 kb on + strand, within GFF308 at 341.602 kb on + strand, within GFF308 at 341.602 kb on + strand, within GFF308 at 341.603 kb on - strand, within GFF308 at 341.603 kb on - strand, within GFF308 at 341.603 kb on - strand, within GFF308 at 341.603 kb on - strand, within GFF308 at 341.603 kb on - strand, within GFF308 at 341.603 kb on - strand, within GFF308 at 341.603 kb on - strand, within GFF308 at 342.163 kb on - strand, within GFF309 at 342.163 kb on - strand, within GFF309 at 342.342 kb on + strand, within GFF309 at 342.342 kb on + strand, within GFF309 at 342.343 kb on - strand, within GFF309 at 342.851 kb on + strand, within GFF310 at 342.851 kb on + strand, within GFF310 at 342.852 kb on - strand, within GFF310 at 342.852 kb on - strand, within GFF310 at 342.852 kb on - strand, within GFF310 at 343.001 kb on + strand, within GFF310 at 343.229 kb on + strand at 343.229 kb on + strand at 343.229 kb on + strand at 343.230 kb on - strand at 343.230 kb on - strand at 343.377 kb on + strand at 343.377 kb on + strand at 343.377 kb on + strand at 343.377 kb on + strand at 343.378 kb on - strand at 343.378 kb on - strand at 343.378 kb on - strand at 343.378 kb on - strand at 343.378 kb on - strand at 343.378 kb on - strand at 343.378 kb on - strand at 343.378 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 341,374 + -0.6 341,374 + +0.7 341,602 + GFF308 0.37 +0.3 341,602 + GFF308 0.37 -0.2 341,602 + GFF308 0.37 -0.8 341,602 + GFF308 0.37 +0.3 341,602 + GFF308 0.37 -1.3 341,602 + GFF308 0.37 -0.1 341,602 + GFF308 0.37 -0.7 341,602 + GFF308 0.37 +1.2 341,602 + GFF308 0.37 -1.3 341,603 - GFF308 0.37 -0.3 341,603 - GFF308 0.37 +0.2 341,603 - GFF308 0.37 -0.5 341,603 - GFF308 0.37 -1.7 341,603 - GFF308 0.37 +0.7 341,603 - GFF308 0.37 +0.2 341,603 - GFF308 0.37 -0.4 342,163 - GFF309 0.22 +1.5 342,163 - GFF309 0.22 -0.0 342,342 + GFF309 0.60 -0.4 342,342 + GFF309 0.60 +0.6 342,343 - GFF309 0.60 +0.4 342,851 + GFF310 0.41 +0.5 342,851 + GFF310 0.41 +0.5 342,852 - GFF310 0.42 -1.0 342,852 - GFF310 0.42 -0.0 342,852 - GFF310 0.42 -1.7 343,001 + GFF310 0.61 +0.5 343,229 + -0.2 343,229 + -0.5 343,229 + +0.5 343,230 - -1.2 343,230 - -0.1 343,377 + -0.2 343,377 + -0.1 343,377 + +0.5 343,377 + -0.6 343,378 - -0.6 343,378 - -0.8 343,378 - -1.2 343,378 - -0.3 343,378 - -0.6 343,378 - +0.5 343,378 - -0.8 343,378 - +0.3
Or see this region's nucleotide sequence