Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3057 and GFF3058 are separated by 26 nucleotides GFF3058 and GFF3059 are separated by 9 nucleotides GFF3059 and GFF3060 are separated by 108 nucleotides
GFF3057 - Aspartate aminotransferase (EC 2.6.1.1), at 491,028 to 492,242
GFF3057
GFF3058 - Demethylmenaquinone methyltransferase-like protein, at 492,269 to 492,940
GFF3058
GFF3059 - Transcriptional regulator, LysR family, at 492,950 to 493,876
GFF3059
GFF3060 - Dihydrodipicolinate synthase family, at 493,985 to 494,923
GFF3060
Position (kb) 492
493
494 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 492.012 kb on + strand, within GFF3057 at 492.012 kb on + strand, within GFF3057 at 492.013 kb on - strand, within GFF3057 at 492.013 kb on - strand, within GFF3057 at 492.013 kb on - strand, within GFF3057 at 492.013 kb on - strand, within GFF3057 at 492.018 kb on + strand, within GFF3057 at 492.018 kb on + strand, within GFF3057 at 492.018 kb on + strand, within GFF3057 at 492.018 kb on + strand, within GFF3057 at 492.019 kb on - strand, within GFF3057 at 492.096 kb on + strand, within GFF3057 at 492.096 kb on + strand, within GFF3057 at 492.096 kb on + strand, within GFF3057 at 492.097 kb on - strand, within GFF3057 at 492.097 kb on - strand, within GFF3057 at 492.097 kb on - strand, within GFF3057 at 492.097 kb on - strand, within GFF3057 at 492.097 kb on - strand, within GFF3057 at 492.097 kb on - strand, within GFF3057 at 492.325 kb on - strand at 492.408 kb on - strand, within GFF3058 at 492.581 kb on + strand, within GFF3058 at 492.582 kb on - strand, within GFF3058 at 492.668 kb on + strand, within GFF3058 at 492.668 kb on + strand, within GFF3058 at 492.668 kb on + strand, within GFF3058 at 492.668 kb on + strand, within GFF3058 at 492.668 kb on + strand, within GFF3058 at 492.669 kb on - strand, within GFF3058 at 492.669 kb on - strand, within GFF3058 at 492.699 kb on - strand, within GFF3058 at 493.025 kb on + strand at 493.025 kb on + strand at 493.025 kb on + strand at 493.025 kb on + strand at 493.025 kb on + strand at 493.025 kb on + strand at 493.025 kb on + strand at 493.025 kb on + strand at 493.026 kb on - strand at 493.026 kb on - strand at 493.026 kb on - strand at 493.026 kb on - strand at 493.026 kb on - strand at 493.026 kb on - strand at 493.026 kb on - strand at 493.026 kb on - strand at 493.264 kb on - strand, within GFF3059 at 493.264 kb on - strand, within GFF3059 at 493.467 kb on + strand, within GFF3059 at 493.467 kb on + strand, within GFF3059 at 493.467 kb on + strand, within GFF3059 at 493.467 kb on + strand, within GFF3059 at 493.468 kb on - strand, within GFF3059 at 493.468 kb on - strand, within GFF3059 at 493.468 kb on - strand, within GFF3059 at 493.893 kb on + strand at 493.893 kb on + strand at 493.893 kb on + strand at 493.893 kb on + strand at 493.894 kb on - strand at 493.899 kb on + strand at 493.899 kb on + strand at 493.899 kb on + strand at 493.899 kb on + strand at 493.899 kb on + strand at 493.900 kb on - strand at 493.900 kb on - strand at 493.900 kb on - strand at 493.900 kb on - strand at 493.912 kb on + strand at 493.913 kb on - strand at 494.441 kb on + strand, within GFF3060 at 494.441 kb on + strand, within GFF3060 at 494.442 kb on - strand, within GFF3060 at 494.480 kb on + strand, within GFF3060 at 494.522 kb on + strand, within GFF3060 at 494.522 kb on + strand, within GFF3060 at 494.523 kb on - strand, within GFF3060 at 494.591 kb on + strand, within GFF3060 at 494.754 kb on - strand, within GFF3060 at 494.754 kb on - strand, within GFF3060 at 494.807 kb on + strand, within GFF3060 at 494.807 kb on + strand, within GFF3060 at 494.807 kb on + strand, within GFF3060 at 494.808 kb on - strand, within GFF3060 at 494.808 kb on - strand, within GFF3060
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 492,012 + GFF3057 0.81 -0.5 492,012 + GFF3057 0.81 -0.9 492,013 - GFF3057 0.81 +0.1 492,013 - GFF3057 0.81 -0.2 492,013 - GFF3057 0.81 -0.9 492,013 - GFF3057 0.81 -0.1 492,018 + GFF3057 0.81 +0.8 492,018 + GFF3057 0.81 +0.1 492,018 + GFF3057 0.81 +0.5 492,018 + GFF3057 0.81 -0.0 492,019 - GFF3057 0.82 +0.6 492,096 + GFF3057 0.88 +0.7 492,096 + GFF3057 0.88 +0.5 492,096 + GFF3057 0.88 +0.8 492,097 - GFF3057 0.88 -0.2 492,097 - GFF3057 0.88 -0.2 492,097 - GFF3057 0.88 +0.1 492,097 - GFF3057 0.88 +0.4 492,097 - GFF3057 0.88 -1.1 492,097 - GFF3057 0.88 +0.1 492,325 - -0.4 492,408 - GFF3058 0.21 -0.1 492,581 + GFF3058 0.46 -0.8 492,582 - GFF3058 0.47 -1.1 492,668 + GFF3058 0.59 -1.0 492,668 + GFF3058 0.59 +0.2 492,668 + GFF3058 0.59 +0.2 492,668 + GFF3058 0.59 -0.4 492,668 + GFF3058 0.59 +0.1 492,669 - GFF3058 0.60 +0.1 492,669 - GFF3058 0.60 -0.5 492,699 - GFF3058 0.64 -0.9 493,025 + -0.3 493,025 + -0.2 493,025 + -0.9 493,025 + -0.5 493,025 + +0.1 493,025 + +0.4 493,025 + +0.8 493,025 + -0.3 493,026 - -0.3 493,026 - +0.7 493,026 - -0.3 493,026 - -1.1 493,026 - -1.9 493,026 - -0.1 493,026 - +0.0 493,026 - +3.3 493,264 - GFF3059 0.34 +0.3 493,264 - GFF3059 0.34 +0.1 493,467 + GFF3059 0.56 +0.7 493,467 + GFF3059 0.56 -1.8 493,467 + GFF3059 0.56 +1.0 493,467 + GFF3059 0.56 +0.7 493,468 - GFF3059 0.56 +0.5 493,468 - GFF3059 0.56 +0.0 493,468 - GFF3059 0.56 -2.2 493,893 + -0.2 493,893 + -0.3 493,893 + -0.2 493,893 + +0.3 493,894 - +0.0 493,899 + -0.3 493,899 + +0.4 493,899 + +0.8 493,899 + +0.3 493,899 + +0.7 493,900 - -0.2 493,900 - -0.1 493,900 - -1.0 493,900 - +1.2 493,912 + -0.3 493,913 - -0.6 494,441 + GFF3060 0.49 +0.1 494,441 + GFF3060 0.49 -0.5 494,442 - GFF3060 0.49 -0.3 494,480 + GFF3060 0.53 -0.1 494,522 + GFF3060 0.57 -0.5 494,522 + GFF3060 0.57 +0.1 494,523 - GFF3060 0.57 +0.1 494,591 + GFF3060 0.65 +0.0 494,754 - GFF3060 0.82 -0.1 494,754 - GFF3060 0.82 -0.6 494,807 + GFF3060 0.88 -0.2 494,807 + GFF3060 0.88 +0.4 494,807 + GFF3060 0.88 -1.0 494,808 - GFF3060 0.88 -0.3 494,808 - GFF3060 0.88 +0.1
Or see this region's nucleotide sequence