Strain Fitness in Variovorax sp. SCN45 around GFF2803

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2802 and GFF2803 overlap by 4 nucleotidesGFF2803 and GFF2804 are separated by 176 nucleotidesGFF2804 and GFF2805 are separated by 145 nucleotides GFF2802 - DUF1176 domain-containing protein, at 231,602 to 232,636 GFF2802 GFF2803 - Alanine transaminase (EC 2.6.1.2), at 232,633 to 233,865 GFF2803 GFF2804 - Membrane protein, at 234,042 to 234,425 GFF2804 GFF2805 - Thiol peroxidase, Bcp-type (EC 1.11.1.15), at 234,571 to 235,047 GFF2805 Position (kb) 232 233 234Strain fitness (log2 ratio) -2 -1 0 1 2at 231.654 kb on + strandat 231.655 kb on - strandat 231.655 kb on - strandat 231.856 kb on - strand, within GFF2802at 231.856 kb on - strand, within GFF2802at 231.894 kb on + strand, within GFF2802at 231.894 kb on + strand, within GFF2802at 231.894 kb on + strand, within GFF2802at 231.894 kb on + strand, within GFF2802at 231.894 kb on + strand, within GFF2802at 231.894 kb on + strand, within GFF2802at 231.894 kb on + strand, within GFF2802at 231.894 kb on + strand, within GFF2802at 231.894 kb on + strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.900 kb on + strand, within GFF2802at 231.900 kb on + strand, within GFF2802at 231.900 kb on + strand, within GFF2802at 231.900 kb on + strand, within GFF2802at 231.901 kb on - strand, within GFF2802at 231.901 kb on - strand, within GFF2802at 231.901 kb on - strand, within GFF2802at 231.901 kb on - strand, within GFF2802at 231.901 kb on - strand, within GFF2802at 231.901 kb on - strand, within GFF2802at 231.901 kb on - strand, within GFF2802at 231.901 kb on - strand, within GFF2802at 231.901 kb on - strand, within GFF2802at 232.459 kb on + strand, within GFF2802at 232.459 kb on + strand, within GFF2802at 232.460 kb on - strand, within GFF2802at 232.460 kb on - strand, within GFF2802at 232.460 kb on - strand, within GFF2802at 232.460 kb on - strand, within GFF2802at 232.460 kb on - strand, within GFF2802at 232.460 kb on - strand, within GFF2802at 232.460 kb on - strand, within GFF2802at 232.838 kb on + strand, within GFF2803at 232.868 kb on + strand, within GFF2803at 232.868 kb on + strand, within GFF2803at 232.868 kb on + strand, within GFF2803at 232.868 kb on + strand, within GFF2803at 232.868 kb on + strand, within GFF2803at 232.868 kb on + strand, within GFF2803at 232.868 kb on + strand, within GFF2803at 232.869 kb on - strand, within GFF2803at 232.869 kb on - strand, within GFF2803at 232.869 kb on - strand, within GFF2803at 232.869 kb on - strand, within GFF2803at 232.926 kb on - strand, within GFF2803at 233.075 kb on + strand, within GFF2803at 233.075 kb on + strand, within GFF2803at 233.075 kb on + strand, within GFF2803at 233.075 kb on + strand, within GFF2803at 233.075 kb on + strand, within GFF2803at 233.076 kb on - strand, within GFF2803at 233.076 kb on - strand, within GFF2803at 233.142 kb on - strand, within GFF2803at 233.142 kb on - strand, within GFF2803at 233.142 kb on - strand, within GFF2803at 233.222 kb on + strand, within GFF2803at 233.223 kb on - strand, within GFF2803at 233.237 kb on + strand, within GFF2803at 233.237 kb on + strand, within GFF2803at 233.313 kb on - strand, within GFF2803at 233.313 kb on - strand, within GFF2803at 233.430 kb on - strand, within GFF2803at 233.430 kb on - strand, within GFF2803at 233.430 kb on - strand, within GFF2803at 233.571 kb on - strand, within GFF2803at 233.571 kb on - strand, within GFF2803at 233.571 kb on - strand, within GFF2803at 233.571 kb on - strand, within GFF2803at 233.571 kb on - strand, within GFF2803at 233.571 kb on - strand, within GFF2803at 233.823 kb on - strandat 233.823 kb on - strandat 233.823 kb on - strandat 233.823 kb on - strandat 233.823 kb on - strandat 233.823 kb on - strandat 233.919 kb on + strandat 233.920 kb on - strandat 233.920 kb on - strandat 233.920 kb on - strandat 233.920 kb on - strandat 233.920 kb on - strandat 234.013 kb on - strandat 234.015 kb on - strandat 234.354 kb on + strand, within GFF2804at 234.354 kb on + strand, within GFF2804at 234.354 kb on + strand, within GFF2804at 234.354 kb on + strand, within GFF2804at 234.355 kb on - strand, within GFF2804at 234.355 kb on - strand, within GFF2804at 234.355 kb on - strand, within GFF2804at 234.355 kb on - strand, within GFF2804at 234.355 kb on - strand, within GFF2804at 234.355 kb on - strand, within GFF2804at 234.426 kb on + strandat 234.426 kb on + strandat 234.426 kb on + strandat 234.426 kb on + strandat 234.426 kb on + strandat 234.427 kb on - strandat 234.427 kb on - strandat 234.427 kb on - strandat 234.427 kb on - strandat 234.427 kb on - strandat 234.427 kb on - strandat 234.443 kb on + strandat 234.448 kb on + strandat 234.448 kb on + strandat 234.448 kb on + strandat 234.448 kb on + strandat 234.448 kb on + strandat 234.449 kb on - strandat 234.449 kb on - strandat 234.449 kb on - strandat 234.451 kb on + strandat 234.451 kb on + strandat 234.452 kb on - strandat 234.482 kb on + strandat 234.482 kb on + strandat 234.482 kb on + strandat 234.482 kb on + strandat 234.483 kb on - strandat 234.551 kb on + strandat 234.551 kb on + strandat 234.551 kb on + strandat 234.551 kb on + strandat 234.551 kb on + strandat 234.551 kb on + strandat 234.551 kb on + strandat 234.551 kb on + strandat 234.552 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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231,654 + -0.6
231,655 - +0.1
231,655 - -0.3
231,856 - GFF2802 0.25 -2.4
231,856 - GFF2802 0.25 -0.3
231,894 + GFF2802 0.28 -0.3
231,894 + GFF2802 0.28 -0.6
231,894 + GFF2802 0.28 +2.4
231,894 + GFF2802 0.28 +0.7
231,894 + GFF2802 0.28 -0.5
231,894 + GFF2802 0.28 +0.3
231,894 + GFF2802 0.28 -0.2
231,894 + GFF2802 0.28 -0.3
231,894 + GFF2802 0.28 -1.0
231,895 - GFF2802 0.28 +0.7
231,895 - GFF2802 0.28 -0.4
231,895 - GFF2802 0.28 +0.0
231,895 - GFF2802 0.28 +1.0
231,895 - GFF2802 0.28 -0.1
231,895 - GFF2802 0.28 +0.8
231,895 - GFF2802 0.28 +0.9
231,895 - GFF2802 0.28 +0.9
231,895 - GFF2802 0.28 -0.4
231,895 - GFF2802 0.28 -0.8
231,895 - GFF2802 0.28 -0.3
231,900 + GFF2802 0.29 +0.5
231,900 + GFF2802 0.29 +0.5
231,900 + GFF2802 0.29 -1.9
231,900 + GFF2802 0.29 -0.6
231,901 - GFF2802 0.29 +0.3
231,901 - GFF2802 0.29 +0.2
231,901 - GFF2802 0.29 -0.3
231,901 - GFF2802 0.29 -0.8
231,901 - GFF2802 0.29 -0.1
231,901 - GFF2802 0.29 -1.3
231,901 - GFF2802 0.29 -0.3
231,901 - GFF2802 0.29 -1.2
231,901 - GFF2802 0.29 -1.0
232,459 + GFF2802 0.83 -1.1
232,459 + GFF2802 0.83 -0.8
232,460 - GFF2802 0.83 +0.5
232,460 - GFF2802 0.83 -0.6
232,460 - GFF2802 0.83 +0.1
232,460 - GFF2802 0.83 -1.6
232,460 - GFF2802 0.83 +0.5
232,460 - GFF2802 0.83 -0.4
232,460 - GFF2802 0.83 -0.3
232,838 + GFF2803 0.17 +0.1
232,868 + GFF2803 0.19 +0.9
232,868 + GFF2803 0.19 -1.3
232,868 + GFF2803 0.19 +0.2
232,868 + GFF2803 0.19 +0.4
232,868 + GFF2803 0.19 -0.3
232,868 + GFF2803 0.19 -0.1
232,868 + GFF2803 0.19 -0.6
232,869 - GFF2803 0.19 -1.1
232,869 - GFF2803 0.19 -0.8
232,869 - GFF2803 0.19 +0.9
232,869 - GFF2803 0.19 +0.9
232,926 - GFF2803 0.24 -0.5
233,075 + GFF2803 0.36 +0.7
233,075 + GFF2803 0.36 +0.7
233,075 + GFF2803 0.36 +0.9
233,075 + GFF2803 0.36 -1.4
233,075 + GFF2803 0.36 -1.2
233,076 - GFF2803 0.36 +0.1
233,076 - GFF2803 0.36 -0.2
233,142 - GFF2803 0.41 -0.6
233,142 - GFF2803 0.41 +0.7
233,142 - GFF2803 0.41 -0.4
233,222 + GFF2803 0.48 -0.3
233,223 - GFF2803 0.48 +0.6
233,237 + GFF2803 0.49 -0.9
233,237 + GFF2803 0.49 +0.4
233,313 - GFF2803 0.55 -0.6
233,313 - GFF2803 0.55 -1.0
233,430 - GFF2803 0.65 +0.0
233,430 - GFF2803 0.65 -2.6
233,430 - GFF2803 0.65 -1.2
233,571 - GFF2803 0.76 -2.1
233,571 - GFF2803 0.76 -0.5
233,571 - GFF2803 0.76 -0.6
233,571 - GFF2803 0.76 +0.9
233,571 - GFF2803 0.76 -0.5
233,571 - GFF2803 0.76 -2.4
233,823 - +0.4
233,823 - +0.7
233,823 - -0.6
233,823 - +0.1
233,823 - -0.3
233,823 - -0.6
233,919 + +2.7
233,920 - -1.1
233,920 - -0.2
233,920 - -1.4
233,920 - -0.8
233,920 - -0.4
234,013 - -1.2
234,015 - +0.3
234,354 + GFF2804 0.81 +0.5
234,354 + GFF2804 0.81 +0.1
234,354 + GFF2804 0.81 +0.7
234,354 + GFF2804 0.81 +1.7
234,355 - GFF2804 0.82 +0.1
234,355 - GFF2804 0.82 +1.0
234,355 - GFF2804 0.82 +0.9
234,355 - GFF2804 0.82 +0.2
234,355 - GFF2804 0.82 -0.6
234,355 - GFF2804 0.82 -1.1
234,426 + -0.6
234,426 + +0.4
234,426 + -1.1
234,426 + -0.5
234,426 + -0.9
234,427 - +0.2
234,427 - +0.7
234,427 - +0.3
234,427 - -0.5
234,427 - -0.1
234,427 - -0.4
234,443 + -0.0
234,448 + +0.4
234,448 + -1.9
234,448 + +0.1
234,448 + -0.4
234,448 + +0.7
234,449 - +0.7
234,449 - +0.8
234,449 - -0.9
234,451 + +0.2
234,451 + -0.2
234,452 - -0.5
234,482 + -0.8
234,482 + -0.1
234,482 + -0.3
234,482 + -0.5
234,483 - +0.7
234,551 + +0.4
234,551 + -1.6
234,551 + -0.7
234,551 + -0.1
234,551 + +1.4
234,551 + -0.9
234,551 + -0.3
234,551 + -0.6
234,552 - +0.3

Or see this region's nucleotide sequence