Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2764 and GFF2765 are separated by 37 nucleotides GFF2765 and GFF2766 overlap by 4 nucleotides GFF2766 and GFF2767 are separated by 9 nucleotides GFF2767 and GFF2768 are separated by 38 nucleotides
GFF2764 - Carbonic anhydrase-like protein MJ0304, at 195,498 to 196,022
GFF2764
GFF2765 - FIG00005326: uncharacterized protein, at 196,060 to 196,872
GFF2765
GFF2766 - Pentapeptide repeat family protein, at 196,869 to 197,555
GFF2766
GFF2767 - MaoC domain protein dehydratase, at 197,565 to 198,044
GFF2767
GFF2768 - 3-ketoacyl-CoA thiolase 2 [fadN-fadA-fadE operon] (EC 2.3.1.16), at 198,083 to 199,216
GFF2768
Position (kb) 196
197
198 Strain fitness (log2 ratio) -2
-1
0
1
2 at 195.912 kb on + strand, within GFF2764 at 195.912 kb on + strand, within GFF2764 at 195.912 kb on + strand, within GFF2764 at 195.913 kb on - strand, within GFF2764 at 195.913 kb on - strand, within GFF2764 at 195.913 kb on - strand, within GFF2764 at 195.913 kb on - strand, within GFF2764 at 195.913 kb on - strand, within GFF2764 at 195.913 kb on - strand, within GFF2764 at 196.012 kb on + strand at 196.012 kb on + strand at 196.012 kb on + strand at 196.013 kb on - strand at 196.013 kb on - strand at 196.047 kb on + strand at 196.055 kb on + strand at 196.055 kb on + strand at 196.055 kb on + strand at 196.055 kb on + strand at 196.055 kb on + strand at 196.055 kb on + strand at 196.055 kb on + strand at 196.055 kb on + strand at 196.056 kb on - strand at 196.056 kb on - strand at 196.056 kb on - strand at 196.056 kb on - strand at 196.056 kb on - strand at 196.056 kb on - strand at 196.378 kb on + strand, within GFF2765 at 196.378 kb on + strand, within GFF2765 at 196.378 kb on + strand, within GFF2765 at 196.378 kb on + strand, within GFF2765 at 196.378 kb on + strand, within GFF2765 at 196.379 kb on - strand, within GFF2765 at 196.379 kb on - strand, within GFF2765 at 196.379 kb on - strand, within GFF2765 at 196.382 kb on - strand, within GFF2765 at 196.382 kb on - strand, within GFF2765 at 196.459 kb on + strand, within GFF2765 at 196.466 kb on - strand, within GFF2765 at 196.702 kb on + strand, within GFF2765 at 196.703 kb on - strand, within GFF2765 at 196.703 kb on - strand, within GFF2765 at 196.747 kb on + strand, within GFF2765 at 196.748 kb on - strand, within GFF2765 at 196.768 kb on + strand, within GFF2765 at 198.004 kb on + strand at 198.004 kb on + strand at 198.005 kb on - strand at 198.005 kb on - strand at 198.005 kb on - strand at 198.005 kb on - strand at 198.005 kb on - strand at 198.147 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 195,912 + GFF2764 0.79 -0.5 195,912 + GFF2764 0.79 +0.1 195,912 + GFF2764 0.79 -1.0 195,913 - GFF2764 0.79 -0.6 195,913 - GFF2764 0.79 -1.1 195,913 - GFF2764 0.79 +0.1 195,913 - GFF2764 0.79 -1.8 195,913 - GFF2764 0.79 +0.5 195,913 - GFF2764 0.79 +0.3 196,012 + +0.1 196,012 + +0.3 196,012 + -0.4 196,013 - -0.6 196,013 - -1.3 196,047 + +0.6 196,055 + -0.5 196,055 + -0.3 196,055 + +0.3 196,055 + +0.1 196,055 + -0.2 196,055 + -0.5 196,055 + -0.1 196,055 + +1.0 196,056 - +0.8 196,056 - +1.4 196,056 - +0.1 196,056 - -0.5 196,056 - +0.9 196,056 - +0.1 196,378 + GFF2765 0.39 +0.1 196,378 + GFF2765 0.39 -0.7 196,378 + GFF2765 0.39 -0.3 196,378 + GFF2765 0.39 -0.8 196,378 + GFF2765 0.39 -0.9 196,379 - GFF2765 0.39 -0.2 196,379 - GFF2765 0.39 +0.0 196,379 - GFF2765 0.39 +0.9 196,382 - GFF2765 0.40 -1.5 196,382 - GFF2765 0.40 -0.9 196,459 + GFF2765 0.49 -0.4 196,466 - GFF2765 0.50 -0.1 196,702 + GFF2765 0.79 -1.5 196,703 - GFF2765 0.79 -0.4 196,703 - GFF2765 0.79 -0.2 196,747 + GFF2765 0.85 -0.6 196,748 - GFF2765 0.85 -1.0 196,768 + GFF2765 0.87 -0.8 198,004 + +0.5 198,004 + -0.0 198,005 - +2.1 198,005 - +0.3 198,005 - -0.1 198,005 - -0.0 198,005 - -1.2 198,147 + -0.2
Or see this region's nucleotide sequence