Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2724 and GFF2725 are separated by 13 nucleotides GFF2725 and GFF2726 are separated by 22 nucleotides GFF2726 and GFF2727 are separated by 936 nucleotides
GFF2724 - FIG01220323: hypothetical protein, at 156,608 to 157,678
GFF2724
GFF2725 - Isochorismatase (EC 3.3.2.1), at 157,692 to 158,228
GFF2725
GFF2726 - hypothetical protein, at 158,251 to 159,843
GFF2726
GFF2727 - Outer membrane protein romA, at 160,780 to 161,901
GFF2727
Position (kb) 158
159
160 Strain fitness (log2 ratio) -2
-1
0
1
2 at 157.283 kb on + strand, within GFF2724 at 157.283 kb on + strand, within GFF2724 at 157.284 kb on - strand, within GFF2724 at 157.358 kb on + strand, within GFF2724 at 157.358 kb on + strand, within GFF2724 at 157.358 kb on + strand, within GFF2724 at 157.359 kb on - strand, within GFF2724 at 157.361 kb on + strand, within GFF2724 at 157.508 kb on + strand, within GFF2724 at 157.508 kb on + strand, within GFF2724 at 157.508 kb on + strand, within GFF2724 at 157.508 kb on + strand, within GFF2724 at 157.508 kb on + strand, within GFF2724 at 157.508 kb on + strand, within GFF2724 at 157.508 kb on + strand, within GFF2724 at 157.509 kb on - strand, within GFF2724 at 157.509 kb on - strand, within GFF2724 at 157.509 kb on - strand, within GFF2724 at 157.509 kb on - strand, within GFF2724 at 157.509 kb on - strand, within GFF2724 at 157.596 kb on - strand at 157.596 kb on - strand at 157.596 kb on - strand at 157.610 kb on + strand at 157.610 kb on + strand at 157.611 kb on - strand at 157.611 kb on - strand at 157.655 kb on - strand at 157.852 kb on + strand, within GFF2725 at 157.853 kb on - strand, within GFF2725 at 157.906 kb on + strand, within GFF2725 at 157.907 kb on - strand, within GFF2725 at 158.278 kb on + strand at 158.417 kb on + strand, within GFF2726 at 158.417 kb on + strand, within GFF2726 at 158.418 kb on - strand, within GFF2726 at 158.418 kb on - strand, within GFF2726 at 158.507 kb on + strand, within GFF2726 at 158.576 kb on + strand, within GFF2726 at 158.576 kb on + strand, within GFF2726 at 158.576 kb on + strand, within GFF2726 at 158.576 kb on + strand, within GFF2726 at 158.576 kb on + strand, within GFF2726 at 158.577 kb on - strand, within GFF2726 at 158.577 kb on - strand, within GFF2726 at 158.577 kb on - strand, within GFF2726 at 158.577 kb on - strand, within GFF2726 at 158.639 kb on + strand, within GFF2726 at 158.639 kb on + strand, within GFF2726 at 158.639 kb on + strand, within GFF2726 at 158.640 kb on - strand, within GFF2726 at 158.640 kb on - strand, within GFF2726 at 158.640 kb on - strand, within GFF2726 at 158.640 kb on - strand, within GFF2726 at 158.640 kb on - strand, within GFF2726 at 158.640 kb on - strand, within GFF2726 at 158.640 kb on - strand, within GFF2726 at 158.640 kb on - strand, within GFF2726 at 158.640 kb on - strand, within GFF2726 at 158.640 kb on - strand, within GFF2726 at 158.732 kb on + strand, within GFF2726 at 158.733 kb on - strand, within GFF2726 at 158.733 kb on - strand, within GFF2726 at 158.733 kb on - strand, within GFF2726 at 158.733 kb on - strand, within GFF2726 at 159.068 kb on + strand, within GFF2726 at 159.135 kb on - strand, within GFF2726 at 159.135 kb on - strand, within GFF2726 at 159.135 kb on - strand, within GFF2726 at 159.272 kb on + strand, within GFF2726 at 159.272 kb on + strand, within GFF2726 at 159.272 kb on + strand, within GFF2726 at 159.272 kb on + strand, within GFF2726 at 159.272 kb on + strand, within GFF2726 at 159.273 kb on - strand, within GFF2726 at 159.377 kb on + strand, within GFF2726 at 159.378 kb on - strand, within GFF2726 at 159.378 kb on - strand, within GFF2726 at 159.378 kb on - strand, within GFF2726 at 159.378 kb on - strand, within GFF2726 at 159.402 kb on - strand, within GFF2726 at 159.470 kb on + strand, within GFF2726 at 159.470 kb on + strand, within GFF2726 at 159.471 kb on - strand, within GFF2726 at 159.471 kb on - strand, within GFF2726 at 159.471 kb on - strand, within GFF2726 at 159.524 kb on + strand, within GFF2726 at 159.524 kb on + strand, within GFF2726 at 159.525 kb on - strand, within GFF2726 at 159.525 kb on - strand, within GFF2726 at 159.527 kb on + strand, within GFF2726 at 159.528 kb on - strand, within GFF2726 at 159.533 kb on + strand, within GFF2726 at 159.533 kb on + strand, within GFF2726 at 159.533 kb on + strand, within GFF2726 at 159.533 kb on + strand, within GFF2726 at 159.534 kb on - strand, within GFF2726 at 159.534 kb on - strand, within GFF2726 at 159.633 kb on - strand, within GFF2726 at 159.804 kb on - strand at 159.804 kb on - strand at 159.815 kb on + strand at 159.816 kb on - strand at 159.816 kb on - strand at 159.816 kb on - strand at 159.816 kb on - strand at 159.857 kb on - strand at 159.857 kb on - strand at 159.925 kb on - strand at 159.925 kb on - strand at 159.925 kb on - strand at 159.944 kb on + strand at 159.944 kb on + strand at 160.019 kb on - strand at 160.019 kb on - strand at 160.038 kb on + strand at 160.038 kb on + strand at 160.039 kb on - strand at 160.039 kb on - strand at 160.202 kb on + strand at 160.202 kb on + strand at 160.265 kb on + strand at 160.265 kb on + strand at 160.274 kb on + strand at 160.274 kb on + strand at 160.274 kb on + strand at 160.274 kb on + strand at 160.274 kb on + strand at 160.276 kb on + strand at 160.276 kb on + strand at 160.276 kb on + strand at 160.290 kb on - strand at 160.298 kb on - strand at 160.298 kb on - strand at 160.581 kb on + strand at 160.581 kb on + strand at 160.730 kb on + strand at 160.737 kb on + strand at 160.737 kb on + strand at 160.737 kb on + strand at 160.737 kb on + strand at 160.779 kb on + strand at 160.779 kb on + strand at 160.779 kb on + strand at 160.780 kb on - strand at 160.780 kb on - strand at 160.810 kb on + strand at 160.810 kb on + strand at 160.811 kb on - strand at 160.811 kb on - strand at 160.811 kb on - strand at 160.811 kb on - strand at 160.811 kb on - strand at 160.811 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 157,283 + GFF2724 0.63 -1.1 157,283 + GFF2724 0.63 -0.3 157,284 - GFF2724 0.63 +0.3 157,358 + GFF2724 0.70 -1.1 157,358 + GFF2724 0.70 +0.4 157,358 + GFF2724 0.70 -0.7 157,359 - GFF2724 0.70 -0.4 157,361 + GFF2724 0.70 +0.8 157,508 + GFF2724 0.84 +0.7 157,508 + GFF2724 0.84 +0.0 157,508 + GFF2724 0.84 -0.2 157,508 + GFF2724 0.84 -0.9 157,508 + GFF2724 0.84 +0.2 157,508 + GFF2724 0.84 -0.6 157,508 + GFF2724 0.84 +0.6 157,509 - GFF2724 0.84 +0.5 157,509 - GFF2724 0.84 -0.7 157,509 - GFF2724 0.84 +0.5 157,509 - GFF2724 0.84 -0.3 157,509 - GFF2724 0.84 -0.1 157,596 - +0.3 157,596 - +0.9 157,596 - -0.7 157,610 + +0.3 157,610 + -2.2 157,611 - -0.2 157,611 - -0.8 157,655 - -0.6 157,852 + GFF2725 0.30 +0.1 157,853 - GFF2725 0.30 +0.7 157,906 + GFF2725 0.40 -0.5 157,907 - GFF2725 0.40 -0.9 158,278 + -0.9 158,417 + GFF2726 0.10 -0.4 158,417 + GFF2726 0.10 +0.8 158,418 - GFF2726 0.10 +0.2 158,418 - GFF2726 0.10 -0.6 158,507 + GFF2726 0.16 -0.6 158,576 + GFF2726 0.20 -0.8 158,576 + GFF2726 0.20 +0.2 158,576 + GFF2726 0.20 +0.8 158,576 + GFF2726 0.20 -0.7 158,576 + GFF2726 0.20 +2.7 158,577 - GFF2726 0.20 +0.1 158,577 - GFF2726 0.20 +1.3 158,577 - GFF2726 0.20 -0.7 158,577 - GFF2726 0.20 +0.3 158,639 + GFF2726 0.24 +0.1 158,639 + GFF2726 0.24 +0.3 158,639 + GFF2726 0.24 -0.5 158,640 - GFF2726 0.24 -0.9 158,640 - GFF2726 0.24 -0.3 158,640 - GFF2726 0.24 -0.4 158,640 - GFF2726 0.24 +0.6 158,640 - GFF2726 0.24 +0.3 158,640 - GFF2726 0.24 +0.2 158,640 - GFF2726 0.24 -1.7 158,640 - GFF2726 0.24 -0.3 158,640 - GFF2726 0.24 -1.5 158,640 - GFF2726 0.24 +0.5 158,732 + GFF2726 0.30 -0.5 158,733 - GFF2726 0.30 +0.0 158,733 - GFF2726 0.30 +1.7 158,733 - GFF2726 0.30 -0.7 158,733 - GFF2726 0.30 +0.7 159,068 + GFF2726 0.51 -0.7 159,135 - GFF2726 0.55 -0.3 159,135 - GFF2726 0.55 -1.0 159,135 - GFF2726 0.55 -1.5 159,272 + GFF2726 0.64 -0.1 159,272 + GFF2726 0.64 -0.2 159,272 + GFF2726 0.64 -0.2 159,272 + GFF2726 0.64 -0.0 159,272 + GFF2726 0.64 +1.5 159,273 - GFF2726 0.64 +0.9 159,377 + GFF2726 0.71 +0.0 159,378 - GFF2726 0.71 +1.7 159,378 - GFF2726 0.71 +0.1 159,378 - GFF2726 0.71 -0.3 159,378 - GFF2726 0.71 -1.0 159,402 - GFF2726 0.72 +0.1 159,470 + GFF2726 0.77 +1.9 159,470 + GFF2726 0.77 +0.3 159,471 - GFF2726 0.77 -0.3 159,471 - GFF2726 0.77 +0.1 159,471 - GFF2726 0.77 +0.1 159,524 + GFF2726 0.80 +0.7 159,524 + GFF2726 0.80 -0.1 159,525 - GFF2726 0.80 -0.3 159,525 - GFF2726 0.80 +0.8 159,527 + GFF2726 0.80 +1.7 159,528 - GFF2726 0.80 +0.3 159,533 + GFF2726 0.80 -0.2 159,533 + GFF2726 0.80 +0.9 159,533 + GFF2726 0.80 +0.0 159,533 + GFF2726 0.80 -0.1 159,534 - GFF2726 0.81 +0.7 159,534 - GFF2726 0.81 -0.2 159,633 - GFF2726 0.87 -0.8 159,804 - -0.7 159,804 - -0.9 159,815 + -0.2 159,816 - +0.1 159,816 - -1.1 159,816 - -1.1 159,816 - +0.3 159,857 - -1.9 159,857 - -1.3 159,925 - +0.4 159,925 - -0.1 159,925 - -0.7 159,944 + -0.2 159,944 + -0.1 160,019 - -0.4 160,019 - +0.1 160,038 + +1.3 160,038 + +0.0 160,039 - +0.7 160,039 - -0.3 160,202 + -0.8 160,202 + +0.2 160,265 + +1.3 160,265 + +0.8 160,274 + -1.4 160,274 + -0.0 160,274 + -0.3 160,274 + -1.9 160,274 + -0.6 160,276 + +0.0 160,276 + +0.8 160,276 + +0.6 160,290 - +0.9 160,298 - -0.9 160,298 - -0.9 160,581 + -0.3 160,581 + -0.3 160,730 + -0.1 160,737 + -0.7 160,737 + -0.2 160,737 + -0.2 160,737 + -0.3 160,779 + +0.4 160,779 + -1.0 160,779 + -0.5 160,780 - +0.5 160,780 - -0.5 160,810 + -0.2 160,810 + -1.3 160,811 - -0.2 160,811 - -0.3 160,811 - +0.6 160,811 - -0.1 160,811 - -0.2 160,811 - -0.3
Or see this region's nucleotide sequence