Strain Fitness in Variovorax sp. SCN45 around GFF2678

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2677 and GFF2678 are separated by 189 nucleotidesGFF2678 and GFF2679 are separated by 24 nucleotides GFF2677 - Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3), at 98,832 to 100,415 GFF2677 GFF2678 - Glycerol-3-phosphate regulon repressor GlpR, at 100,605 to 101,375 GFF2678 GFF2679 - Glycerol kinase (EC 2.7.1.30), at 101,400 to 102,896 GFF2679 Position (kb) 100 101 102Strain fitness (log2 ratio) -2 -1 0 1 2at 99.625 kb on + strand, within GFF2677at 99.625 kb on + strand, within GFF2677at 99.625 kb on + strand, within GFF2677at 99.625 kb on + strand, within GFF2677at 99.625 kb on + strand, within GFF2677at 99.625 kb on + strand, within GFF2677at 99.626 kb on - strand, within GFF2677at 99.626 kb on - strand, within GFF2677at 99.626 kb on - strand, within GFF2677at 99.626 kb on - strand, within GFF2677at 99.626 kb on - strand, within GFF2677at 99.626 kb on - strand, within GFF2677at 99.626 kb on - strand, within GFF2677at 99.952 kb on + strand, within GFF2677at 99.953 kb on - strand, within GFF2677at 99.953 kb on - strand, within GFF2677at 99.953 kb on - strand, within GFF2677at 99.970 kb on + strand, within GFF2677at 99.970 kb on + strand, within GFF2677at 99.970 kb on + strand, within GFF2677at 99.971 kb on - strand, within GFF2677at 100.060 kb on + strand, within GFF2677at 100.060 kb on + strand, within GFF2677at 100.060 kb on + strand, within GFF2677at 100.060 kb on + strand, within GFF2677at 100.060 kb on + strand, within GFF2677at 100.060 kb on + strand, within GFF2677at 100.061 kb on - strand, within GFF2677at 100.061 kb on - strand, within GFF2677at 100.061 kb on - strand, within GFF2677at 100.061 kb on - strand, within GFF2677at 100.061 kb on - strand, within GFF2677at 100.061 kb on - strand, within GFF2677at 100.061 kb on - strand, within GFF2677at 100.061 kb on - strand, within GFF2677at 100.061 kb on - strand, within GFF2677at 100.061 kb on - strand, within GFF2677at 100.210 kb on + strand, within GFF2677at 100.211 kb on - strand, within GFF2677at 100.211 kb on - strand, within GFF2677at 100.424 kb on + strandat 100.424 kb on + strandat 100.424 kb on + strandat 100.424 kb on + strandat 100.424 kb on + strandat 100.425 kb on - strandat 100.425 kb on - strandat 100.425 kb on - strandat 100.425 kb on - strandat 100.432 kb on - strandat 100.466 kb on + strandat 100.467 kb on - strandat 100.549 kb on + strandat 100.550 kb on - strandat 100.566 kb on + strandat 100.566 kb on + strandat 100.566 kb on + strandat 100.566 kb on + strandat 100.567 kb on - strandat 100.567 kb on - strandat 100.723 kb on + strand, within GFF2678at 100.723 kb on + strand, within GFF2678at 100.723 kb on + strand, within GFF2678at 100.723 kb on + strand, within GFF2678at 100.723 kb on + strand, within GFF2678at 100.724 kb on - strand, within GFF2678at 100.806 kb on + strand, within GFF2678at 100.873 kb on + strand, within GFF2678at 101.173 kb on + strand, within GFF2678at 101.173 kb on + strand, within GFF2678at 101.174 kb on - strand, within GFF2678at 101.174 kb on - strand, within GFF2678at 101.409 kb on + strandat 101.409 kb on + strandat 101.409 kb on + strandat 101.409 kb on + strandat 101.409 kb on + strandat 101.409 kb on + strandat 101.410 kb on - strandat 101.410 kb on - strandat 101.410 kb on - strandat 101.410 kb on - strandat 101.410 kb on - strandat 101.410 kb on - strandat 101.497 kb on - strandat 101.511 kb on + strandat 101.511 kb on + strandat 101.512 kb on - strandat 101.799 kb on + strand, within GFF2679at 101.800 kb on - strand, within GFF2679at 101.800 kb on - strand, within GFF2679at 102.186 kb on + strand, within GFF2679at 102.186 kb on + strand, within GFF2679at 102.187 kb on - strand, within GFF2679at 102.187 kb on - strand, within GFF2679at 102.187 kb on - strand, within GFF2679at 102.187 kb on - strand, within GFF2679at 102.292 kb on - strand, within GFF2679at 102.292 kb on - strand, within GFF2679at 102.292 kb on - strand, within GFF2679at 102.296 kb on + strand, within GFF2679at 102.297 kb on - strand, within GFF2679

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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99,625 + GFF2677 0.50 -0.2
99,625 + GFF2677 0.50 -0.3
99,625 + GFF2677 0.50 -0.9
99,625 + GFF2677 0.50 -0.5
99,625 + GFF2677 0.50 +0.9
99,625 + GFF2677 0.50 +0.1
99,626 - GFF2677 0.50 +1.1
99,626 - GFF2677 0.50 -0.9
99,626 - GFF2677 0.50 -0.4
99,626 - GFF2677 0.50 -0.2
99,626 - GFF2677 0.50 +1.0
99,626 - GFF2677 0.50 -0.9
99,626 - GFF2677 0.50 +0.7
99,952 + GFF2677 0.71 +1.3
99,953 - GFF2677 0.71 -1.7
99,953 - GFF2677 0.71 -1.4
99,953 - GFF2677 0.71 -0.5
99,970 + GFF2677 0.72 +1.1
99,970 + GFF2677 0.72 -0.3
99,970 + GFF2677 0.72 -0.5
99,971 - GFF2677 0.72 -0.3
100,060 + GFF2677 0.78 -0.5
100,060 + GFF2677 0.78 +0.1
100,060 + GFF2677 0.78 +2.7
100,060 + GFF2677 0.78 +1.7
100,060 + GFF2677 0.78 +0.7
100,060 + GFF2677 0.78 +0.5
100,061 - GFF2677 0.78 -1.6
100,061 - GFF2677 0.78 +0.7
100,061 - GFF2677 0.78 -0.2
100,061 - GFF2677 0.78 +1.1
100,061 - GFF2677 0.78 +0.5
100,061 - GFF2677 0.78 -0.1
100,061 - GFF2677 0.78 -1.3
100,061 - GFF2677 0.78 -0.1
100,061 - GFF2677 0.78 +1.7
100,061 - GFF2677 0.78 +0.3
100,210 + GFF2677 0.87 -1.7
100,211 - GFF2677 0.87 -0.4
100,211 - GFF2677 0.87 +1.8
100,424 + +0.1
100,424 + -0.5
100,424 + -0.5
100,424 + -0.1
100,424 + +0.7
100,425 - -0.3
100,425 - -0.7
100,425 - -0.3
100,425 - +0.0
100,432 - -0.3
100,466 + -0.4
100,467 - -0.5
100,549 + -0.1
100,550 - -0.4
100,566 + +0.4
100,566 + +0.9
100,566 + -0.3
100,566 + -0.0
100,567 - -0.9
100,567 - +0.7
100,723 + GFF2678 0.15 -0.7
100,723 + GFF2678 0.15 -1.1
100,723 + GFF2678 0.15 -0.0
100,723 + GFF2678 0.15 +1.7
100,723 + GFF2678 0.15 -1.8
100,724 - GFF2678 0.15 -0.6
100,806 + GFF2678 0.26 -1.1
100,873 + GFF2678 0.35 -0.7
101,173 + GFF2678 0.74 -2.1
101,173 + GFF2678 0.74 -1.6
101,174 - GFF2678 0.74 +0.1
101,174 - GFF2678 0.74 +0.2
101,409 + -0.7
101,409 + +2.1
101,409 + +0.5
101,409 + -0.1
101,409 + +0.3
101,409 + -0.5
101,410 - +0.1
101,410 - -2.3
101,410 - +0.3
101,410 - +0.5
101,410 - +1.7
101,410 - +0.2
101,497 - -0.6
101,511 + -0.4
101,511 + -0.4
101,512 - +0.2
101,799 + GFF2679 0.27 -1.3
101,800 - GFF2679 0.27 -1.7
101,800 - GFF2679 0.27 +0.3
102,186 + GFF2679 0.53 +1.1
102,186 + GFF2679 0.53 +1.1
102,187 - GFF2679 0.53 -0.3
102,187 - GFF2679 0.53 -0.8
102,187 - GFF2679 0.53 +0.5
102,187 - GFF2679 0.53 -0.1
102,292 - GFF2679 0.60 -0.3
102,292 - GFF2679 0.60 -0.4
102,292 - GFF2679 0.60 -0.6
102,296 + GFF2679 0.60 +0.1
102,297 - GFF2679 0.60 -0.1

Or see this region's nucleotide sequence