Strain Fitness in Variovorax sp. SCN45 around GFF2665

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2663 and GFF2664 overlap by 4 nucleotidesGFF2664 and GFF2665 are separated by 18 nucleotidesGFF2665 and GFF2666 are separated by 71 nucleotides GFF2663 - FIG022979: MoxR-like ATPases, at 85,580 to 86,500 GFF2663 GFF2664 - FIG002343: hypothetical protein, at 86,497 to 87,474 GFF2664 GFF2665 - FIG001454: Transglutaminase-like enzymes, putative cysteine proteases, at 87,493 to 89,514 GFF2665 GFF2666 - Membrane-bound lytic murein transglycosylase B, at 89,586 to 90,668 GFF2666 Position (kb) 87 88 89 90Strain fitness (log2 ratio) -2 -1 0 1at 86.593 kb on + strandat 86.593 kb on + strandat 86.593 kb on + strandat 86.593 kb on + strandat 86.594 kb on - strandat 86.594 kb on - strandat 86.666 kb on - strand, within GFF2664at 86.684 kb on - strand, within GFF2664at 86.684 kb on - strand, within GFF2664at 86.848 kb on + strand, within GFF2664at 86.849 kb on - strand, within GFF2664at 87.053 kb on - strand, within GFF2664at 87.727 kb on + strand, within GFF2665at 87.727 kb on + strand, within GFF2665at 87.727 kb on + strand, within GFF2665at 87.728 kb on - strand, within GFF2665at 87.878 kb on - strand, within GFF2665at 87.878 kb on - strand, within GFF2665at 88.219 kb on + strand, within GFF2665at 88.219 kb on + strand, within GFF2665at 88.220 kb on - strand, within GFF2665at 88.337 kb on - strand, within GFF2665at 88.337 kb on - strand, within GFF2665at 88.498 kb on + strand, within GFF2665at 88.498 kb on + strand, within GFF2665at 88.498 kb on + strand, within GFF2665at 88.499 kb on - strand, within GFF2665at 88.552 kb on + strand, within GFF2665at 88.552 kb on + strand, within GFF2665at 88.553 kb on - strand, within GFF2665at 88.688 kb on - strand, within GFF2665at 88.693 kb on + strand, within GFF2665at 88.693 kb on + strand, within GFF2665at 88.694 kb on - strand, within GFF2665at 88.694 kb on - strand, within GFF2665at 88.694 kb on - strand, within GFF2665at 88.871 kb on - strand, within GFF2665at 88.871 kb on - strand, within GFF2665at 88.871 kb on - strand, within GFF2665at 88.871 kb on - strand, within GFF2665at 89.113 kb on + strand, within GFF2665at 89.113 kb on + strand, within GFF2665at 89.113 kb on + strand, within GFF2665at 89.114 kb on - strand, within GFF2665at 89.186 kb on - strand, within GFF2665at 89.186 kb on - strand, within GFF2665at 89.186 kb on - strand, within GFF2665at 89.186 kb on - strand, within GFF2665at 89.197 kb on + strand, within GFF2665at 89.198 kb on - strand, within GFF2665at 89.429 kb on - strandat 89.653 kb on + strandat 89.654 kb on - strandat 89.654 kb on - strandat 89.654 kb on - strandat 89.654 kb on - strandat 89.716 kb on - strand, within GFF2666at 89.881 kb on - strand, within GFF2666at 89.973 kb on + strand, within GFF2666at 89.974 kb on - strand, within GFF2666at 90.024 kb on + strand, within GFF2666at 90.024 kb on + strand, within GFF2666at 90.024 kb on + strand, within GFF2666at 90.024 kb on + strand, within GFF2666at 90.024 kb on + strand, within GFF2666at 90.024 kb on + strand, within GFF2666at 90.024 kb on + strand, within GFF2666at 90.024 kb on + strand, within GFF2666at 90.024 kb on + strand, within GFF2666at 90.025 kb on - strand, within GFF2666at 90.025 kb on - strand, within GFF2666at 90.025 kb on - strand, within GFF2666at 90.202 kb on - strand, within GFF2666at 90.202 kb on - strand, within GFF2666at 90.252 kb on + strand, within GFF2666at 90.252 kb on + strand, within GFF2666at 90.330 kb on + strand, within GFF2666at 90.330 kb on + strand, within GFF2666at 90.330 kb on + strand, within GFF2666at 90.373 kb on - strand, within GFF2666at 90.373 kb on - strand, within GFF2666

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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86,593 + +1.3
86,593 + -1.0
86,593 + +0.7
86,593 + -0.7
86,594 - -0.1
86,594 - -0.0
86,666 - GFF2664 0.17 +0.8
86,684 - GFF2664 0.19 +0.9
86,684 - GFF2664 0.19 -0.6
86,848 + GFF2664 0.36 -0.1
86,849 - GFF2664 0.36 +0.7
87,053 - GFF2664 0.57 -0.5
87,727 + GFF2665 0.12 +0.9
87,727 + GFF2665 0.12 +0.3
87,727 + GFF2665 0.12 +0.2
87,728 - GFF2665 0.12 +0.1
87,878 - GFF2665 0.19 -0.3
87,878 - GFF2665 0.19 -0.4
88,219 + GFF2665 0.36 +0.0
88,219 + GFF2665 0.36 +0.3
88,220 - GFF2665 0.36 +0.2
88,337 - GFF2665 0.42 +0.5
88,337 - GFF2665 0.42 -0.3
88,498 + GFF2665 0.50 -0.3
88,498 + GFF2665 0.50 -0.5
88,498 + GFF2665 0.50 +0.3
88,499 - GFF2665 0.50 +0.1
88,552 + GFF2665 0.52 +0.7
88,552 + GFF2665 0.52 +0.1
88,553 - GFF2665 0.52 +0.0
88,688 - GFF2665 0.59 -0.1
88,693 + GFF2665 0.59 -0.1
88,693 + GFF2665 0.59 +0.7
88,694 - GFF2665 0.59 +0.1
88,694 - GFF2665 0.59 -0.3
88,694 - GFF2665 0.59 -0.7
88,871 - GFF2665 0.68 +1.0
88,871 - GFF2665 0.68 -0.5
88,871 - GFF2665 0.68 +0.1
88,871 - GFF2665 0.68 -0.1
89,113 + GFF2665 0.80 +0.8
89,113 + GFF2665 0.80 +0.2
89,113 + GFF2665 0.80 -0.9
89,114 - GFF2665 0.80 -0.7
89,186 - GFF2665 0.84 -0.5
89,186 - GFF2665 0.84 -1.1
89,186 - GFF2665 0.84 +0.4
89,186 - GFF2665 0.84 +0.4
89,197 + GFF2665 0.84 +0.3
89,198 - GFF2665 0.84 +0.4
89,429 - +0.4
89,653 + +0.3
89,654 - +0.8
89,654 - -0.2
89,654 - -0.8
89,654 - +0.1
89,716 - GFF2666 0.12 +0.4
89,881 - GFF2666 0.27 -1.3
89,973 + GFF2666 0.36 +0.0
89,974 - GFF2666 0.36 -0.3
90,024 + GFF2666 0.40 -1.0
90,024 + GFF2666 0.40 +0.2
90,024 + GFF2666 0.40 -0.7
90,024 + GFF2666 0.40 +0.4
90,024 + GFF2666 0.40 -0.9
90,024 + GFF2666 0.40 -0.2
90,024 + GFF2666 0.40 -1.9
90,024 + GFF2666 0.40 -0.6
90,024 + GFF2666 0.40 -0.8
90,025 - GFF2666 0.41 -0.7
90,025 - GFF2666 0.41 -0.7
90,025 - GFF2666 0.41 +0.1
90,202 - GFF2666 0.57 -0.9
90,202 - GFF2666 0.57 +0.7
90,252 + GFF2666 0.61 -0.9
90,252 + GFF2666 0.61 -0.5
90,330 + GFF2666 0.69 -0.9
90,330 + GFF2666 0.69 -0.9
90,330 + GFF2666 0.69 +1.1
90,373 - GFF2666 0.73 -0.4
90,373 - GFF2666 0.73 -0.3

Or see this region's nucleotide sequence