Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2606 and GFF2607 are separated by 19 nucleotides GFF2607 and GFF2608 overlap by 4 nucleotides GFF2608 and GFF2609 overlap by 8 nucleotides GFF2609 and GFF2610 overlap by 1 nucleotides
GFF2606 - Tripartite tricarboxylate transporter TctC family, at 11,467 to 12,483
GFF2606
GFF2607 - hypothetical protein, at 12,503 to 12,904
GFF2607
GFF2608 - Transcriptional regulator FrcR for fructose utilization, ROK family, at 12,901 to 14,124
GFF2608
GFF2609 - Fructose ABC transporter, ATP-binding component FrcA, at 14,117 to 14,914
GFF2609
GFF2610 - Fructose ABC transporter, permease component FrcC, at 14,914 to 15,873
GFF2610
Position (kb) 12
13
14
15 Strain fitness (log2 ratio) -1
0
1 at 12.268 kb on + strand, within GFF2606 at 12.268 kb on + strand, within GFF2606 at 12.269 kb on - strand, within GFF2606 at 12.269 kb on - strand, within GFF2606 at 12.346 kb on + strand, within GFF2606 at 12.346 kb on + strand, within GFF2606 at 12.346 kb on + strand, within GFF2606 at 12.376 kb on + strand, within GFF2606 at 12.376 kb on + strand, within GFF2606 at 12.377 kb on - strand, within GFF2606 at 12.377 kb on - strand, within GFF2606 at 12.412 kb on + strand at 12.412 kb on + strand at 12.412 kb on + strand at 12.413 kb on - strand at 12.527 kb on + strand at 12.803 kb on + strand, within GFF2607 at 12.803 kb on + strand, within GFF2607 at 12.803 kb on + strand, within GFF2607 at 12.803 kb on + strand, within GFF2607 at 12.803 kb on + strand, within GFF2607 at 12.803 kb on + strand, within GFF2607 at 12.803 kb on + strand, within GFF2607 at 12.804 kb on - strand, within GFF2607 at 12.804 kb on - strand, within GFF2607 at 12.804 kb on - strand, within GFF2607 at 12.804 kb on - strand, within GFF2607 at 12.804 kb on - strand, within GFF2607 at 12.804 kb on - strand, within GFF2607 at 13.233 kb on - strand, within GFF2608 at 13.428 kb on + strand, within GFF2608 at 13.428 kb on + strand, within GFF2608 at 13.437 kb on - strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.748 kb on + strand, within GFF2608 at 13.749 kb on - strand, within GFF2608 at 14.118 kb on + strand at 14.118 kb on + strand at 14.118 kb on + strand at 14.118 kb on + strand at 14.607 kb on + strand, within GFF2609 at 14.607 kb on + strand, within GFF2609 at 14.607 kb on + strand, within GFF2609 at 14.643 kb on + strand, within GFF2609 at 14.644 kb on - strand, within GFF2609 at 14.644 kb on - strand, within GFF2609 at 14.856 kb on + strand at 14.857 kb on - strand at 14.991 kb on - strand at 14.991 kb on - strand at 14.991 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 12,268 + GFF2606 0.79 +0.1 12,268 + GFF2606 0.79 -1.0 12,269 - GFF2606 0.79 +0.4 12,269 - GFF2606 0.79 -0.0 12,346 + GFF2606 0.86 -0.1 12,346 + GFF2606 0.86 -0.3 12,346 + GFF2606 0.86 -0.8 12,376 + GFF2606 0.89 +0.5 12,376 + GFF2606 0.89 -0.1 12,377 - GFF2606 0.89 -0.7 12,377 - GFF2606 0.89 -0.3 12,412 + +0.3 12,412 + -0.2 12,412 + -0.2 12,413 - +0.9 12,527 + -0.4 12,803 + GFF2607 0.75 +1.3 12,803 + GFF2607 0.75 +0.1 12,803 + GFF2607 0.75 +0.2 12,803 + GFF2607 0.75 +0.3 12,803 + GFF2607 0.75 +1.3 12,803 + GFF2607 0.75 -0.3 12,803 + GFF2607 0.75 -0.1 12,804 - GFF2607 0.75 +1.4 12,804 - GFF2607 0.75 +0.1 12,804 - GFF2607 0.75 -1.0 12,804 - GFF2607 0.75 -0.0 12,804 - GFF2607 0.75 +1.5 12,804 - GFF2607 0.75 -0.8 13,233 - GFF2608 0.27 +0.3 13,428 + GFF2608 0.43 +0.7 13,428 + GFF2608 0.43 +0.3 13,437 - GFF2608 0.44 +1.3 13,442 + GFF2608 0.44 -0.7 13,442 + GFF2608 0.44 +0.2 13,442 + GFF2608 0.44 +1.3 13,442 + GFF2608 0.44 -0.3 13,442 + GFF2608 0.44 -0.4 13,442 + GFF2608 0.44 -0.3 13,442 + GFF2608 0.44 -0.0 13,442 + GFF2608 0.44 -0.4 13,442 + GFF2608 0.44 +0.9 13,442 + GFF2608 0.44 -0.6 13,443 - GFF2608 0.44 +1.3 13,443 - GFF2608 0.44 +1.1 13,443 - GFF2608 0.44 -0.1 13,443 - GFF2608 0.44 +0.5 13,443 - GFF2608 0.44 +0.1 13,443 - GFF2608 0.44 +0.1 13,443 - GFF2608 0.44 +0.8 13,748 + GFF2608 0.69 -0.7 13,749 - GFF2608 0.69 +0.1 14,118 + -0.4 14,118 + -0.4 14,118 + +0.7 14,118 + -0.7 14,607 + GFF2609 0.61 -0.9 14,607 + GFF2609 0.61 +0.1 14,607 + GFF2609 0.61 -0.3 14,643 + GFF2609 0.66 +0.1 14,644 - GFF2609 0.66 -0.3 14,644 - GFF2609 0.66 -0.1 14,856 + +0.4 14,857 - -0.3 14,991 - +0.8 14,991 - -1.3 14,991 - -0.4
Or see this region's nucleotide sequence