Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2452 and GFF2453 are separated by 85 nucleotides GFF2453 and GFF2454 are separated by 266 nucleotides
GFF2452 - NAD-dependent dihydropyrimidine dehydrogenase subunit PreA (EC 1.3.1.1), at 508,292 to 509,602
GFF2452
GFF2453 - NAD-dependent dihydropyrimidine dehydrogenase subunit PreT (EC 1.3.1.1), at 509,688 to 511,058
GFF2453
GFF2454 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 511,325 to 512,776
GFF2454
Position (kb) 509
510
511
512 Strain fitness (log2 ratio) -1
0
1
2 at 508.734 kb on + strand, within GFF2452 at 508.735 kb on - strand, within GFF2452 at 508.735 kb on - strand, within GFF2452 at 508.735 kb on - strand, within GFF2452 at 508.876 kb on + strand, within GFF2452 at 508.876 kb on + strand, within GFF2452 at 508.876 kb on + strand, within GFF2452 at 508.877 kb on - strand, within GFF2452 at 508.877 kb on - strand, within GFF2452 at 509.100 kb on + strand, within GFF2452 at 509.133 kb on + strand, within GFF2452 at 509.133 kb on + strand, within GFF2452 at 509.410 kb on - strand, within GFF2452 at 509.421 kb on + strand, within GFF2452 at 509.796 kb on + strand at 509.796 kb on + strand at 509.796 kb on + strand at 509.797 kb on - strand at 509.797 kb on - strand at 510.346 kb on + strand, within GFF2453 at 510.346 kb on + strand, within GFF2453 at 510.469 kb on + strand, within GFF2453 at 510.470 kb on - strand, within GFF2453 at 510.895 kb on + strand, within GFF2453 at 510.895 kb on + strand, within GFF2453 at 510.901 kb on + strand, within GFF2453 at 510.901 kb on + strand, within GFF2453 at 510.901 kb on + strand, within GFF2453 at 510.901 kb on + strand, within GFF2453 at 510.902 kb on - strand, within GFF2453 at 510.902 kb on - strand, within GFF2453 at 510.902 kb on - strand, within GFF2453 at 510.902 kb on - strand, within GFF2453 at 510.904 kb on + strand, within GFF2453 at 510.904 kb on + strand, within GFF2453 at 510.905 kb on - strand, within GFF2453 at 510.905 kb on - strand, within GFF2453 at 511.179 kb on + strand at 511.179 kb on + strand at 511.179 kb on + strand at 511.179 kb on + strand at 511.179 kb on + strand at 511.179 kb on + strand at 511.179 kb on + strand at 511.180 kb on - strand at 511.180 kb on - strand at 511.568 kb on + strand, within GFF2454 at 511.568 kb on + strand, within GFF2454 at 511.569 kb on - strand, within GFF2454 at 511.569 kb on - strand, within GFF2454 at 511.619 kb on + strand, within GFF2454 at 511.619 kb on + strand, within GFF2454 at 511.619 kb on + strand, within GFF2454 at 511.619 kb on + strand, within GFF2454 at 511.620 kb on - strand, within GFF2454 at 511.620 kb on - strand, within GFF2454 at 511.622 kb on + strand, within GFF2454 at 511.622 kb on + strand, within GFF2454 at 511.622 kb on + strand, within GFF2454 at 511.622 kb on + strand, within GFF2454 at 511.622 kb on + strand, within GFF2454 at 511.622 kb on + strand, within GFF2454 at 511.622 kb on + strand, within GFF2454 at 511.622 kb on + strand, within GFF2454 at 511.623 kb on - strand, within GFF2454 at 511.623 kb on - strand, within GFF2454 at 511.623 kb on - strand, within GFF2454 at 511.623 kb on - strand, within GFF2454 at 511.623 kb on - strand, within GFF2454 at 511.623 kb on - strand, within GFF2454
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 508,734 + GFF2452 0.34 -0.9 508,735 - GFF2452 0.34 +0.1 508,735 - GFF2452 0.34 +0.4 508,735 - GFF2452 0.34 -0.1 508,876 + GFF2452 0.45 -0.6 508,876 + GFF2452 0.45 -0.3 508,876 + GFF2452 0.45 +2.3 508,877 - GFF2452 0.45 -0.9 508,877 - GFF2452 0.45 -0.2 509,100 + GFF2452 0.62 -0.4 509,133 + GFF2452 0.64 +1.7 509,133 + GFF2452 0.64 -0.7 509,410 - GFF2452 0.85 +0.3 509,421 + GFF2452 0.86 -1.1 509,796 + +0.6 509,796 + -1.3 509,796 + +0.3 509,797 - +0.6 509,797 - -0.1 510,346 + GFF2453 0.48 -0.3 510,346 + GFF2453 0.48 -0.7 510,469 + GFF2453 0.57 -0.5 510,470 - GFF2453 0.57 +0.7 510,895 + GFF2453 0.88 +0.0 510,895 + GFF2453 0.88 -0.4 510,901 + GFF2453 0.88 +0.6 510,901 + GFF2453 0.88 +1.7 510,901 + GFF2453 0.88 -0.6 510,901 + GFF2453 0.88 +0.1 510,902 - GFF2453 0.89 +0.1 510,902 - GFF2453 0.89 +0.0 510,902 - GFF2453 0.89 +0.3 510,902 - GFF2453 0.89 +0.0 510,904 + GFF2453 0.89 +0.0 510,904 + GFF2453 0.89 +0.4 510,905 - GFF2453 0.89 -0.8 510,905 - GFF2453 0.89 -0.5 511,179 + -0.2 511,179 + +0.7 511,179 + +0.3 511,179 + +0.1 511,179 + +0.1 511,179 + -0.4 511,179 + +0.7 511,180 - +0.8 511,180 - -0.1 511,568 + GFF2454 0.17 -0.8 511,568 + GFF2454 0.17 +0.2 511,569 - GFF2454 0.17 -0.9 511,569 - GFF2454 0.17 -0.7 511,619 + GFF2454 0.20 +0.1 511,619 + GFF2454 0.20 -0.1 511,619 + GFF2454 0.20 -0.5 511,619 + GFF2454 0.20 -0.4 511,620 - GFF2454 0.20 +0.1 511,620 - GFF2454 0.20 +0.4 511,622 + GFF2454 0.20 +1.3 511,622 + GFF2454 0.20 -0.0 511,622 + GFF2454 0.20 +0.3 511,622 + GFF2454 0.20 +0.3 511,622 + GFF2454 0.20 -0.3 511,622 + GFF2454 0.20 +0.6 511,622 + GFF2454 0.20 -0.1 511,622 + GFF2454 0.20 -0.1 511,623 - GFF2454 0.21 -0.1 511,623 - GFF2454 0.21 -1.5 511,623 - GFF2454 0.21 +0.2 511,623 - GFF2454 0.21 -0.5 511,623 - GFF2454 0.21 +0.5 511,623 - GFF2454 0.21 +1.1
Or see this region's nucleotide sequence