Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2391 and GFF2392 overlap by 4 nucleotides GFF2392 and GFF2393 are separated by 14 nucleotides GFF2393 and GFF2394 are separated by 34 nucleotides GFF2394 and GFF2395 are separated by 44 nucleotides
GFF2391 - KEGG: periplasmic protein TonB, at 441,715 to 442,368
GFF2391
GFF2392 - Biopolymer transport protein ExbD/TolR, at 442,365 to 442,799
GFF2392
GFF2393 - Biopolymer transport protein ExbD/TolR, at 442,814 to 443,242
GFF2393
GFF2394 - MotA/TolQ/ExbB proton channel family protein, at 443,277 to 444,146
GFF2394
GFF2395 - D-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.-), at 444,191 to 445,384
GFF2395
Position (kb) 442
443
444 Strain fitness (log2 ratio) -1
0
1 at 441.871 kb on + strand, within GFF2391 at 441.871 kb on + strand, within GFF2391 at 441.871 kb on + strand, within GFF2391 at 441.872 kb on - strand, within GFF2391 at 442.106 kb on + strand, within GFF2391 at 442.106 kb on + strand, within GFF2391 at 442.106 kb on + strand, within GFF2391 at 442.106 kb on + strand, within GFF2391 at 442.106 kb on + strand, within GFF2391 at 442.272 kb on + strand, within GFF2391 at 442.273 kb on - strand, within GFF2391 at 442.878 kb on + strand, within GFF2393 at 442.879 kb on - strand, within GFF2393 at 443.016 kb on + strand, within GFF2393 at 443.017 kb on - strand, within GFF2393 at 443.377 kb on + strand, within GFF2394 at 443.377 kb on + strand, within GFF2394 at 443.504 kb on - strand, within GFF2394 at 443.504 kb on - strand, within GFF2394 at 443.504 kb on - strand, within GFF2394 at 443.504 kb on - strand, within GFF2394 at 443.504 kb on - strand, within GFF2394 at 443.836 kb on + strand, within GFF2394 at 443.837 kb on - strand, within GFF2394
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 441,871 + GFF2391 0.24 -0.3 441,871 + GFF2391 0.24 -0.8 441,871 + GFF2391 0.24 -1.4 441,872 - GFF2391 0.24 +0.5 442,106 + GFF2391 0.60 +0.1 442,106 + GFF2391 0.60 -0.1 442,106 + GFF2391 0.60 -0.3 442,106 + GFF2391 0.60 +0.6 442,106 + GFF2391 0.60 -1.3 442,272 + GFF2391 0.85 -0.6 442,273 - GFF2391 0.85 +0.5 442,878 + GFF2393 0.15 -0.5 442,879 - GFF2393 0.15 -0.3 443,016 + GFF2393 0.47 -0.7 443,017 - GFF2393 0.47 -1.6 443,377 + GFF2394 0.11 +0.4 443,377 + GFF2394 0.11 -0.5 443,504 - GFF2394 0.26 +0.4 443,504 - GFF2394 0.26 -1.7 443,504 - GFF2394 0.26 -0.5 443,504 - GFF2394 0.26 -0.3 443,504 - GFF2394 0.26 -0.5 443,836 + GFF2394 0.64 -0.6 443,837 - GFF2394 0.64 -1.0
Or see this region's nucleotide sequence