Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2326 and GFF2327 are separated by 0 nucleotides GFF2327 and GFF2328 are separated by 51 nucleotides GFF2328 and GFF2329 are separated by 31 nucleotides
GFF2326 - Transcriptional regulator, LysR family, at 377,823 to 378,725
GFF2326
GFF2327 - Hydrolase, alpha/beta fold family, at 378,726 to 379,493
GFF2327
GFF2328 - no description, at 379,545 to 380,186
GFF2328
GFF2329 - Phosphoglycerate mutase (EC 5.4.2.11), at 380,218 to 380,916
GFF2329
Position (kb) 378
379
380 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 377.773 kb on + strand at 378.330 kb on + strand, within GFF2326 at 378.330 kb on + strand, within GFF2326 at 378.330 kb on + strand, within GFF2326 at 378.330 kb on + strand, within GFF2326 at 378.331 kb on - strand, within GFF2326 at 378.603 kb on + strand, within GFF2326 at 378.637 kb on - strand at 379.016 kb on - strand, within GFF2327 at 379.017 kb on - strand, within GFF2327 at 379.066 kb on + strand, within GFF2327 at 379.066 kb on + strand, within GFF2327 at 379.066 kb on + strand, within GFF2327 at 379.112 kb on - strand, within GFF2327 at 379.419 kb on + strand at 379.419 kb on + strand at 379.419 kb on + strand at 379.471 kb on + strand at 379.471 kb on + strand at 379.471 kb on + strand at 379.472 kb on - strand at 379.472 kb on - strand at 379.472 kb on - strand at 379.472 kb on - strand at 379.512 kb on + strand at 379.512 kb on + strand at 379.512 kb on + strand at 379.512 kb on + strand at 379.512 kb on + strand at 379.513 kb on - strand at 379.638 kb on + strand, within GFF2328 at 379.648 kb on - strand, within GFF2328 at 379.648 kb on - strand, within GFF2328 at 379.648 kb on - strand, within GFF2328 at 379.776 kb on + strand, within GFF2328 at 379.776 kb on + strand, within GFF2328 at 379.776 kb on + strand, within GFF2328 at 379.776 kb on + strand, within GFF2328 at 379.777 kb on - strand, within GFF2328 at 379.777 kb on - strand, within GFF2328 at 379.884 kb on + strand, within GFF2328 at 379.965 kb on + strand, within GFF2328 at 379.974 kb on + strand, within GFF2328 at 379.974 kb on + strand, within GFF2328 at 379.974 kb on + strand, within GFF2328 at 379.974 kb on + strand, within GFF2328 at 379.974 kb on + strand, within GFF2328 at 379.974 kb on + strand, within GFF2328 at 379.975 kb on - strand, within GFF2328 at 379.975 kb on - strand, within GFF2328 at 379.975 kb on - strand, within GFF2328 at 379.975 kb on - strand, within GFF2328 at 379.975 kb on - strand, within GFF2328 at 379.975 kb on - strand, within GFF2328 at 379.975 kb on - strand, within GFF2328 at 379.983 kb on + strand, within GFF2328 at 379.983 kb on + strand, within GFF2328 at 379.984 kb on - strand, within GFF2328 at 379.984 kb on - strand, within GFF2328 at 380.034 kb on + strand, within GFF2328 at 380.034 kb on + strand, within GFF2328 at 380.034 kb on + strand, within GFF2328 at 380.035 kb on - strand, within GFF2328 at 380.035 kb on - strand, within GFF2328 at 380.035 kb on - strand, within GFF2328 at 380.036 kb on + strand, within GFF2328 at 380.036 kb on + strand, within GFF2328 at 380.037 kb on - strand, within GFF2328
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 377,773 + -0.9 378,330 + GFF2326 0.56 -0.1 378,330 + GFF2326 0.56 -0.9 378,330 + GFF2326 0.56 +0.3 378,330 + GFF2326 0.56 -0.5 378,331 - GFF2326 0.56 -0.0 378,603 + GFF2326 0.86 -0.7 378,637 - +0.2 379,016 - GFF2327 0.38 -0.6 379,017 - GFF2327 0.38 -2.3 379,066 + GFF2327 0.44 +0.5 379,066 + GFF2327 0.44 +1.1 379,066 + GFF2327 0.44 -0.4 379,112 - GFF2327 0.50 +0.2 379,419 + +0.0 379,419 + +0.3 379,419 + -0.5 379,471 + -0.1 379,471 + +0.8 379,471 + -0.3 379,472 - +0.0 379,472 - -0.0 379,472 - -0.0 379,472 - -0.2 379,512 + +0.1 379,512 + +0.6 379,512 + +0.7 379,512 + -0.3 379,512 + -0.2 379,513 - -0.1 379,638 + GFF2328 0.14 +0.4 379,648 - GFF2328 0.16 +0.0 379,648 - GFF2328 0.16 -1.1 379,648 - GFF2328 0.16 +0.4 379,776 + GFF2328 0.36 -0.6 379,776 + GFF2328 0.36 +0.0 379,776 + GFF2328 0.36 -0.7 379,776 + GFF2328 0.36 +1.4 379,777 - GFF2328 0.36 -0.3 379,777 - GFF2328 0.36 +0.4 379,884 + GFF2328 0.53 -0.3 379,965 + GFF2328 0.65 -0.4 379,974 + GFF2328 0.67 +0.3 379,974 + GFF2328 0.67 -0.9 379,974 + GFF2328 0.67 -0.3 379,974 + GFF2328 0.67 +1.7 379,974 + GFF2328 0.67 -0.3 379,974 + GFF2328 0.67 -0.6 379,975 - GFF2328 0.67 -0.1 379,975 - GFF2328 0.67 -0.6 379,975 - GFF2328 0.67 +0.4 379,975 - GFF2328 0.67 +0.2 379,975 - GFF2328 0.67 +0.7 379,975 - GFF2328 0.67 -2.5 379,975 - GFF2328 0.67 +0.5 379,983 + GFF2328 0.68 -0.8 379,983 + GFF2328 0.68 +0.3 379,984 - GFF2328 0.68 -0.8 379,984 - GFF2328 0.68 +3.3 380,034 + GFF2328 0.76 -0.8 380,034 + GFF2328 0.76 -0.2 380,034 + GFF2328 0.76 +1.7 380,035 - GFF2328 0.76 +0.1 380,035 - GFF2328 0.76 -0.1 380,035 - GFF2328 0.76 -0.3 380,036 + GFF2328 0.76 -1.1 380,036 + GFF2328 0.76 -0.1 380,037 - GFF2328 0.77 -1.3
Or see this region's nucleotide sequence