Strain Fitness in Variovorax sp. SCN45 around GFF2269

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2267 and GFF2268 are separated by 100 nucleotidesGFF2268 and GFF2269 are separated by 70 nucleotidesGFF2269 and GFF2270 are separated by 5 nucleotidesGFF2270 and GFF2271 are separated by 14 nucleotides GFF2267 - Integral membrane protein, at 322,058 to 322,816 GFF2267 GFF2268 - Protein of unknown function DUF1428, at 322,917 to 323,276 GFF2268 GFF2269 - Uncharacterized MFS-type transporter, at 323,347 to 324,813 GFF2269 GFF2270 - PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein, at 324,819 to 325,238 GFF2270 GFF2271 - FIG00454722: hypothetical protein, at 325,253 to 325,780 GFF2271 Position (kb) 323 324 325Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 322.535 kb on + strand, within GFF2267at 322.535 kb on + strand, within GFF2267at 322.535 kb on + strand, within GFF2267at 322.535 kb on + strand, within GFF2267at 322.535 kb on + strand, within GFF2267at 322.536 kb on - strand, within GFF2267at 322.536 kb on - strand, within GFF2267at 322.536 kb on - strand, within GFF2267at 322.536 kb on - strand, within GFF2267at 322.536 kb on - strand, within GFF2267at 322.536 kb on - strand, within GFF2267at 322.536 kb on - strand, within GFF2267at 322.536 kb on - strand, within GFF2267at 322.586 kb on + strand, within GFF2267at 322.586 kb on + strand, within GFF2267at 322.586 kb on + strand, within GFF2267at 322.587 kb on - strand, within GFF2267at 322.587 kb on - strand, within GFF2267at 322.748 kb on + strandat 322.749 kb on - strandat 322.749 kb on - strandat 322.797 kb on - strandat 322.807 kb on + strandat 322.808 kb on - strandat 322.808 kb on - strandat 322.808 kb on - strandat 322.808 kb on - strandat 323.056 kb on + strand, within GFF2268at 323.056 kb on + strand, within GFF2268at 323.056 kb on + strand, within GFF2268at 323.056 kb on + strand, within GFF2268at 323.056 kb on + strand, within GFF2268at 323.056 kb on + strand, within GFF2268at 323.057 kb on - strand, within GFF2268at 323.057 kb on - strand, within GFF2268at 323.057 kb on - strand, within GFF2268at 323.057 kb on - strand, within GFF2268at 323.057 kb on - strand, within GFF2268at 323.161 kb on + strand, within GFF2268at 323.161 kb on + strand, within GFF2268at 323.162 kb on - strand, within GFF2268at 323.177 kb on - strand, within GFF2268at 323.262 kb on + strandat 323.262 kb on + strandat 323.262 kb on + strandat 323.262 kb on + strandat 323.262 kb on + strandat 323.263 kb on - strandat 323.266 kb on + strandat 323.266 kb on + strandat 323.266 kb on + strandat 323.267 kb on - strandat 323.267 kb on - strandat 323.267 kb on - strandat 323.489 kb on + strandat 323.918 kb on + strand, within GFF2269at 323.918 kb on + strand, within GFF2269at 323.919 kb on - strand, within GFF2269at 323.939 kb on + strand, within GFF2269at 323.939 kb on + strand, within GFF2269at 323.939 kb on + strand, within GFF2269at 323.939 kb on + strand, within GFF2269at 323.940 kb on - strand, within GFF2269at 323.940 kb on - strand, within GFF2269at 323.940 kb on - strand, within GFF2269at 324.164 kb on + strand, within GFF2269at 324.164 kb on + strand, within GFF2269at 324.164 kb on + strand, within GFF2269at 324.165 kb on - strand, within GFF2269at 324.165 kb on - strand, within GFF2269at 324.165 kb on - strand, within GFF2269at 324.165 kb on - strand, within GFF2269at 324.165 kb on - strand, within GFF2269at 324.272 kb on + strand, within GFF2269at 324.273 kb on - strand, within GFF2269at 324.273 kb on - strand, within GFF2269at 324.273 kb on - strand, within GFF2269at 324.593 kb on + strand, within GFF2269at 324.594 kb on - strand, within GFF2269at 324.594 kb on - strand, within GFF2269at 324.647 kb on + strand, within GFF2269at 324.647 kb on + strand, within GFF2269at 324.648 kb on - strand, within GFF2269at 324.648 kb on - strand, within GFF2269at 324.648 kb on - strand, within GFF2269at 324.648 kb on - strand, within GFF2269at 324.820 kb on + strandat 325.015 kb on + strand, within GFF2270at 325.016 kb on - strand, within GFF2270at 325.016 kb on - strand, within GFF2270at 325.016 kb on - strand, within GFF2270at 325.022 kb on + strand, within GFF2270at 325.178 kb on - strand, within GFF2270at 325.220 kb on - strandat 325.390 kb on + strand, within GFF2271at 325.390 kb on + strand, within GFF2271at 325.390 kb on + strand, within GFF2271at 325.391 kb on - strand, within GFF2271at 325.542 kb on + strand, within GFF2271at 325.542 kb on + strand, within GFF2271at 325.542 kb on + strand, within GFF2271at 325.542 kb on + strand, within GFF2271at 325.542 kb on + strand, within GFF2271at 325.542 kb on + strand, within GFF2271at 325.542 kb on + strand, within GFF2271at 325.542 kb on + strand, within GFF2271at 325.542 kb on + strand, within GFF2271at 325.542 kb on + strand, within GFF2271at 325.543 kb on - strand, within GFF2271at 325.608 kb on + strand, within GFF2271at 325.608 kb on + strand, within GFF2271at 325.608 kb on + strand, within GFF2271at 325.609 kb on - strand, within GFF2271

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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322,535 + GFF2267 0.63 +0.4
322,535 + GFF2267 0.63 -1.7
322,535 + GFF2267 0.63 -0.9
322,535 + GFF2267 0.63 -1.0
322,535 + GFF2267 0.63 -0.2
322,536 - GFF2267 0.63 +0.3
322,536 - GFF2267 0.63 -0.0
322,536 - GFF2267 0.63 +0.6
322,536 - GFF2267 0.63 +1.7
322,536 - GFF2267 0.63 -1.5
322,536 - GFF2267 0.63 -0.7
322,536 - GFF2267 0.63 +1.3
322,536 - GFF2267 0.63 -1.7
322,586 + GFF2267 0.70 -0.1
322,586 + GFF2267 0.70 -0.6
322,586 + GFF2267 0.70 +0.4
322,587 - GFF2267 0.70 +0.1
322,587 - GFF2267 0.70 -0.2
322,748 + +0.6
322,749 - -0.0
322,749 - +0.2
322,797 - -0.8
322,807 + -2.3
322,808 - +0.4
322,808 - +0.1
322,808 - +0.5
322,808 - -0.0
323,056 + GFF2268 0.39 +0.6
323,056 + GFF2268 0.39 -2.9
323,056 + GFF2268 0.39 +0.0
323,056 + GFF2268 0.39 +1.2
323,056 + GFF2268 0.39 +0.0
323,056 + GFF2268 0.39 +0.0
323,057 - GFF2268 0.39 -0.4
323,057 - GFF2268 0.39 -0.4
323,057 - GFF2268 0.39 -0.6
323,057 - GFF2268 0.39 +1.1
323,057 - GFF2268 0.39 +0.6
323,161 + GFF2268 0.68 -0.0
323,161 + GFF2268 0.68 -0.4
323,162 - GFF2268 0.68 -0.8
323,177 - GFF2268 0.72 -0.3
323,262 + -0.6
323,262 + -1.3
323,262 + -0.1
323,262 + +0.1
323,262 + -0.3
323,263 - -0.1
323,266 + +1.2
323,266 + -0.8
323,266 + -0.5
323,267 - +0.1
323,267 - -0.3
323,267 - -1.1
323,489 + +0.5
323,918 + GFF2269 0.39 +0.6
323,918 + GFF2269 0.39 -0.4
323,919 - GFF2269 0.39 +1.0
323,939 + GFF2269 0.40 +0.4
323,939 + GFF2269 0.40 +0.3
323,939 + GFF2269 0.40 -0.5
323,939 + GFF2269 0.40 +3.0
323,940 - GFF2269 0.40 -0.1
323,940 - GFF2269 0.40 -0.2
323,940 - GFF2269 0.40 +0.5
324,164 + GFF2269 0.56 +0.1
324,164 + GFF2269 0.56 -0.4
324,164 + GFF2269 0.56 +1.7
324,165 - GFF2269 0.56 -0.1
324,165 - GFF2269 0.56 -0.4
324,165 - GFF2269 0.56 +0.1
324,165 - GFF2269 0.56 -0.4
324,165 - GFF2269 0.56 +0.5
324,272 + GFF2269 0.63 +0.5
324,273 - GFF2269 0.63 +0.6
324,273 - GFF2269 0.63 -0.1
324,273 - GFF2269 0.63 +0.4
324,593 + GFF2269 0.85 +0.3
324,594 - GFF2269 0.85 +0.1
324,594 - GFF2269 0.85 +0.4
324,647 + GFF2269 0.89 -1.1
324,647 + GFF2269 0.89 -0.7
324,648 - GFF2269 0.89 -0.7
324,648 - GFF2269 0.89 +0.9
324,648 - GFF2269 0.89 -1.5
324,648 - GFF2269 0.89 -0.9
324,820 + +0.3
325,015 + GFF2270 0.47 +0.1
325,016 - GFF2270 0.47 -0.6
325,016 - GFF2270 0.47 -0.4
325,016 - GFF2270 0.47 -0.1
325,022 + GFF2270 0.48 -0.8
325,178 - GFF2270 0.85 -0.4
325,220 - -0.9
325,390 + GFF2271 0.26 +1.3
325,390 + GFF2271 0.26 -1.2
325,390 + GFF2271 0.26 -1.1
325,391 - GFF2271 0.26 -0.3
325,542 + GFF2271 0.55 -0.9
325,542 + GFF2271 0.55 -0.4
325,542 + GFF2271 0.55 -1.6
325,542 + GFF2271 0.55 +0.2
325,542 + GFF2271 0.55 +1.0
325,542 + GFF2271 0.55 -0.5
325,542 + GFF2271 0.55 +0.7
325,542 + GFF2271 0.55 +0.1
325,542 + GFF2271 0.55 +0.5
325,542 + GFF2271 0.55 -0.5
325,543 - GFF2271 0.55 +0.5
325,608 + GFF2271 0.67 -0.6
325,608 + GFF2271 0.67 -1.3
325,608 + GFF2271 0.67 -0.0
325,609 - GFF2271 0.67 +1.1

Or see this region's nucleotide sequence