Strain Fitness in Variovorax sp. SCN45 around GFF2155

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2154 and GFF2155 are separated by 184 nucleotidesGFF2155 and GFF2156 are separated by 49 nucleotides GFF2154 - twitching motility protein PilJ, at 200,662 to 202,968 GFF2154 GFF2155 - Signal transduction histidine kinase CheA, at 203,153 to 209,362 GFF2155 GFF2156 - Deoxyribodipyrimidine photolyase (EC 4.1.99.3), at 209,412 to 210,911 GFF2156 Position (kb) 203 204 205 206 207 208 209 210Strain fitness (log2 ratio) -3 -2 -1 0 1at 202.881 kb on + strandat 202.881 kb on + strandat 202.881 kb on + strandat 202.881 kb on + strandat 202.882 kb on - strandat 202.882 kb on - strandat 202.887 kb on + strandat 202.888 kb on - strandat 202.888 kb on - strandat 202.888 kb on - strandat 203.065 kb on + strandat 203.065 kb on + strandat 203.065 kb on + strandat 203.131 kb on + strandat 203.131 kb on + strandat 203.131 kb on + strandat 203.131 kb on + strandat 203.131 kb on + strandat 203.131 kb on + strandat 203.131 kb on + strandat 203.131 kb on + strandat 203.131 kb on + strandat 203.131 kb on + strandat 203.131 kb on + strandat 203.131 kb on + strandat 203.131 kb on + strandat 203.131 kb on + strandat 203.132 kb on - strandat 203.132 kb on - strandat 203.132 kb on - strandat 203.132 kb on - strandat 203.132 kb on - strandat 203.132 kb on - strandat 203.132 kb on - strandat 203.132 kb on - strandat 203.133 kb on - strandat 203.685 kb on - strandat 203.685 kb on - strandat 203.885 kb on + strand, within GFF2155at 203.885 kb on + strand, within GFF2155at 203.885 kb on + strand, within GFF2155at 203.885 kb on + strand, within GFF2155at 203.886 kb on - strand, within GFF2155at 203.886 kb on - strand, within GFF2155at 203.886 kb on - strand, within GFF2155at 203.921 kb on + strand, within GFF2155at 203.921 kb on + strand, within GFF2155at 203.921 kb on + strand, within GFF2155at 203.921 kb on + strand, within GFF2155at 203.921 kb on + strand, within GFF2155at 203.921 kb on + strand, within GFF2155at 203.922 kb on - strand, within GFF2155at 203.922 kb on - strand, within GFF2155at 204.080 kb on + strand, within GFF2155at 204.081 kb on - strand, within GFF2155at 204.081 kb on - strand, within GFF2155at 204.362 kb on + strand, within GFF2155at 204.363 kb on - strand, within GFF2155at 204.590 kb on + strand, within GFF2155at 204.590 kb on + strand, within GFF2155at 204.590 kb on + strand, within GFF2155at 204.590 kb on + strand, within GFF2155at 204.590 kb on + strand, within GFF2155at 204.591 kb on - strand, within GFF2155at 204.591 kb on - strand, within GFF2155at 204.591 kb on - strand, within GFF2155at 204.591 kb on - strand, within GFF2155at 204.591 kb on - strand, within GFF2155at 206.441 kb on + strand, within GFF2155at 206.441 kb on + strand, within GFF2155at 206.442 kb on - strand, within GFF2155at 206.442 kb on - strand, within GFF2155at 206.442 kb on - strand, within GFF2155at 206.442 kb on - strand, within GFF2155at 206.450 kb on + strand, within GFF2155at 206.450 kb on + strand, within GFF2155at 206.450 kb on + strand, within GFF2155at 206.451 kb on - strand, within GFF2155at 206.451 kb on - strand, within GFF2155at 206.451 kb on - strand, within GFF2155at 206.451 kb on - strand, within GFF2155at 206.451 kb on - strand, within GFF2155at 206.451 kb on - strand, within GFF2155at 206.493 kb on - strand, within GFF2155at 208.550 kb on + strand, within GFF2155at 208.550 kb on + strand, within GFF2155at 208.551 kb on - strand, within GFF2155at 208.595 kb on + strand, within GFF2155at 208.596 kb on - strand, within GFF2155at 208.820 kb on + strandat 208.820 kb on + strandat 208.820 kb on + strandat 208.820 kb on + strandat 208.820 kb on + strandat 208.820 kb on + strandat 208.821 kb on - strandat 208.821 kb on - strandat 208.821 kb on - strandat 208.821 kb on - strandat 208.821 kb on - strandat 209.246 kb on + strandat 209.247 kb on - strandat 209.273 kb on + strandat 209.273 kb on + strandat 209.274 kb on - strandat 209.274 kb on - strandat 209.274 kb on - strandat 209.274 kb on - strandat 209.325 kb on - strandat 209.379 kb on + strandat 209.380 kb on - strandat 209.380 kb on - strandat 209.380 kb on - strandat 209.380 kb on - strandat 209.500 kb on + strandat 209.500 kb on + strandat 209.500 kb on + strandat 209.500 kb on + strandat 209.501 kb on - strandat 209.501 kb on - strandat 209.603 kb on - strand, within GFF2156at 209.603 kb on - strand, within GFF2156at 209.671 kb on + strand, within GFF2156at 209.672 kb on - strand, within GFF2156at 209.672 kb on - strand, within GFF2156at 209.761 kb on + strand, within GFF2156at 209.761 kb on + strand, within GFF2156at 209.761 kb on + strand, within GFF2156at 209.761 kb on + strand, within GFF2156at 209.761 kb on + strand, within GFF2156at 209.762 kb on - strand, within GFF2156at 209.762 kb on - strand, within GFF2156at 209.842 kb on + strand, within GFF2156at 209.842 kb on + strand, within GFF2156at 209.843 kb on - strand, within GFF2156at 209.843 kb on - strand, within GFF2156at 209.962 kb on + strand, within GFF2156at 209.962 kb on + strand, within GFF2156at 209.962 kb on + strand, within GFF2156at 209.963 kb on - strand, within GFF2156at 210.004 kb on + strand, within GFF2156at 210.004 kb on + strand, within GFF2156at 210.004 kb on + strand, within GFF2156at 210.005 kb on - strand, within GFF2156at 210.005 kb on - strand, within GFF2156at 210.005 kb on - strand, within GFF2156at 210.031 kb on + strand, within GFF2156at 210.031 kb on + strand, within GFF2156at 210.031 kb on + strand, within GFF2156at 210.032 kb on - strand, within GFF2156at 210.032 kb on - strand, within GFF2156at 210.032 kb on - strand, within GFF2156at 210.160 kb on + strand, within GFF2156at 210.160 kb on + strand, within GFF2156at 210.160 kb on + strand, within GFF2156at 210.160 kb on + strand, within GFF2156at 210.160 kb on + strand, within GFF2156at 210.160 kb on + strand, within GFF2156at 210.160 kb on + strand, within GFF2156at 210.161 kb on - strand, within GFF2156at 210.161 kb on - strand, within GFF2156at 210.161 kb on - strand, within GFF2156at 210.161 kb on - strand, within GFF2156at 210.161 kb on - strand, within GFF2156at 210.161 kb on - strand, within GFF2156at 210.161 kb on - strand, within GFF2156at 210.203 kb on - strand, within GFF2156at 210.264 kb on + strand, within GFF2156at 210.264 kb on + strand, within GFF2156at 210.264 kb on + strand, within GFF2156at 210.264 kb on + strand, within GFF2156at 210.265 kb on - strand, within GFF2156

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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202,881 + +0.5
202,881 + +1.1
202,881 + +0.8
202,881 + +1.0
202,882 - +0.8
202,882 - +0.1
202,887 + +1.0
202,888 - +0.6
202,888 - +0.8
202,888 - +1.6
203,065 + +0.1
203,065 + -0.1
203,065 + -0.7
203,131 + +1.7
203,131 + +0.1
203,131 + +1.2
203,131 + -0.0
203,131 + +1.7
203,131 + -0.3
203,131 + -1.4
203,131 + +1.7
203,131 + -0.2
203,131 + +0.1
203,131 + -0.3
203,131 + -0.5
203,131 + -1.4
203,131 + +0.5
203,132 - +1.7
203,132 - -0.6
203,132 - -0.6
203,132 - -0.5
203,132 - -0.8
203,132 - +0.4
203,132 - +0.4
203,132 - +0.5
203,133 - -0.6
203,685 - +0.4
203,685 - -0.5
203,885 + GFF2155 0.12 +0.4
203,885 + GFF2155 0.12 -0.2
203,885 + GFF2155 0.12 +0.8
203,885 + GFF2155 0.12 -0.6
203,886 - GFF2155 0.12 -1.3
203,886 - GFF2155 0.12 -1.0
203,886 - GFF2155 0.12 +0.3
203,921 + GFF2155 0.12 -0.5
203,921 + GFF2155 0.12 -0.0
203,921 + GFF2155 0.12 -0.1
203,921 + GFF2155 0.12 -2.9
203,921 + GFF2155 0.12 +0.7
203,921 + GFF2155 0.12 -0.3
203,922 - GFF2155 0.12 -0.6
203,922 - GFF2155 0.12 -0.7
204,080 + GFF2155 0.15 +0.5
204,081 - GFF2155 0.15 -0.0
204,081 - GFF2155 0.15 +0.1
204,362 + GFF2155 0.19 +0.7
204,363 - GFF2155 0.19 +0.7
204,590 + GFF2155 0.23 -0.4
204,590 + GFF2155 0.23 -0.4
204,590 + GFF2155 0.23 -0.3
204,590 + GFF2155 0.23 -0.6
204,590 + GFF2155 0.23 +0.4
204,591 - GFF2155 0.23 -1.7
204,591 - GFF2155 0.23 -0.6
204,591 - GFF2155 0.23 -0.4
204,591 - GFF2155 0.23 -0.0
204,591 - GFF2155 0.23 +1.0
206,441 + GFF2155 0.53 -1.9
206,441 + GFF2155 0.53 +1.7
206,442 - GFF2155 0.53 -0.1
206,442 - GFF2155 0.53 +1.2
206,442 - GFF2155 0.53 +1.0
206,442 - GFF2155 0.53 +0.9
206,450 + GFF2155 0.53 +0.2
206,450 + GFF2155 0.53 +0.3
206,450 + GFF2155 0.53 -0.1
206,451 - GFF2155 0.53 +1.6
206,451 - GFF2155 0.53 +1.0
206,451 - GFF2155 0.53 +1.2
206,451 - GFF2155 0.53 +0.2
206,451 - GFF2155 0.53 +0.9
206,451 - GFF2155 0.53 +0.9
206,493 - GFF2155 0.54 +0.9
208,550 + GFF2155 0.87 +0.1
208,550 + GFF2155 0.87 -1.3
208,551 - GFF2155 0.87 +0.7
208,595 + GFF2155 0.88 +1.7
208,596 - GFF2155 0.88 +0.2
208,820 + +1.0
208,820 + +1.1
208,820 + +1.2
208,820 + +1.5
208,820 + +0.6
208,820 + +1.1
208,821 - +0.1
208,821 - +0.8
208,821 - +1.0
208,821 - +0.9
208,821 - +0.8
209,246 + -2.0
209,247 - -1.8
209,273 + -0.4
209,273 + +0.7
209,274 - -2.1
209,274 - -2.1
209,274 - -2.4
209,274 - -2.1
209,325 - -1.0
209,379 + +0.6
209,380 - +0.3
209,380 - -0.7
209,380 - +1.0
209,380 - -1.1
209,500 + -0.6
209,500 + -0.1
209,500 + +0.1
209,500 + -0.1
209,501 - -0.7
209,501 - +1.4
209,603 - GFF2156 0.13 +0.1
209,603 - GFF2156 0.13 -0.3
209,671 + GFF2156 0.17 +1.5
209,672 - GFF2156 0.17 -0.0
209,672 - GFF2156 0.17 -0.3
209,761 + GFF2156 0.23 +0.3
209,761 + GFF2156 0.23 -0.5
209,761 + GFF2156 0.23 -0.2
209,761 + GFF2156 0.23 -0.8
209,761 + GFF2156 0.23 +0.6
209,762 - GFF2156 0.23 -0.3
209,762 - GFF2156 0.23 +0.1
209,842 + GFF2156 0.29 -1.3
209,842 + GFF2156 0.29 -0.9
209,843 - GFF2156 0.29 -0.4
209,843 - GFF2156 0.29 -0.1
209,962 + GFF2156 0.37 -0.6
209,962 + GFF2156 0.37 -0.5
209,962 + GFF2156 0.37 -0.0
209,963 - GFF2156 0.37 +0.0
210,004 + GFF2156 0.39 -0.3
210,004 + GFF2156 0.39 +0.4
210,004 + GFF2156 0.39 +1.7
210,005 - GFF2156 0.40 -0.5
210,005 - GFF2156 0.40 -0.8
210,005 - GFF2156 0.40 -0.7
210,031 + GFF2156 0.41 +0.3
210,031 + GFF2156 0.41 +1.4
210,031 + GFF2156 0.41 +0.2
210,032 - GFF2156 0.41 -0.5
210,032 - GFF2156 0.41 -0.7
210,032 - GFF2156 0.41 +1.7
210,160 + GFF2156 0.50 -1.0
210,160 + GFF2156 0.50 +1.0
210,160 + GFF2156 0.50 -0.8
210,160 + GFF2156 0.50 -0.0
210,160 + GFF2156 0.50 -0.5
210,160 + GFF2156 0.50 +1.4
210,160 + GFF2156 0.50 +0.6
210,161 - GFF2156 0.50 +0.7
210,161 - GFF2156 0.50 -0.1
210,161 - GFF2156 0.50 -0.7
210,161 - GFF2156 0.50 +0.0
210,161 - GFF2156 0.50 -0.1
210,161 - GFF2156 0.50 -0.2
210,161 - GFF2156 0.50 -0.3
210,203 - GFF2156 0.53 -0.2
210,264 + GFF2156 0.57 +0.9
210,264 + GFF2156 0.57 -0.6
210,264 + GFF2156 0.57 -0.4
210,264 + GFF2156 0.57 +0.3
210,265 - GFF2156 0.57 +0.5

Or see this region's nucleotide sequence