Strain Fitness in Variovorax sp. SCN45 around GFF2042

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2040 and GFF2041 are separated by 1 nucleotidesGFF2041 and GFF2042 are separated by 99 nucleotidesGFF2042 and GFF2043 overlap by 4 nucleotidesGFF2043 and GFF2044 are separated by 108 nucleotides GFF2040 - Putative drug efflux protein, at 88,226 to 89,476 GFF2040 GFF2041 - Haloacid dehalogenase-like hydrolase, at 89,478 to 90,311 GFF2041 GFF2042 - Efflux ABC transporter, ATP-binding protein, at 90,411 to 91,406 GFF2042 GFF2043 - Efflux ABC transporter, permease protein, at 91,403 to 92,242 GFF2043 GFF2044 - Efflux ABC transporter, permease protein, at 92,351 to 93,133 GFF2044 Position (kb) 90 91 92Strain fitness (log2 ratio) -2 -1 0 1 2at 89.426 kb on + strandat 89.426 kb on + strandat 89.426 kb on + strandat 89.427 kb on - strandat 89.479 kb on + strandat 89.479 kb on + strandat 89.479 kb on + strandat 89.479 kb on + strandat 89.479 kb on + strandat 89.479 kb on + strandat 89.479 kb on + strandat 89.479 kb on + strandat 89.480 kb on - strandat 89.480 kb on - strandat 89.480 kb on - strandat 89.480 kb on - strandat 89.480 kb on - strandat 89.551 kb on + strandat 89.552 kb on - strandat 89.552 kb on - strandat 89.552 kb on - strandat 89.552 kb on - strandat 89.552 kb on - strandat 89.659 kb on + strand, within GFF2041at 89.659 kb on + strand, within GFF2041at 89.659 kb on + strand, within GFF2041at 89.659 kb on + strand, within GFF2041at 89.659 kb on + strand, within GFF2041at 89.660 kb on - strand, within GFF2041at 89.660 kb on - strand, within GFF2041at 89.660 kb on - strand, within GFF2041at 89.660 kb on - strand, within GFF2041at 89.749 kb on + strand, within GFF2041at 89.992 kb on + strand, within GFF2041at 89.992 kb on + strand, within GFF2041at 89.993 kb on - strand, within GFF2041at 89.993 kb on - strand, within GFF2041at 90.365 kb on + strandat 90.365 kb on + strandat 90.365 kb on + strandat 90.365 kb on + strandat 90.365 kb on + strandat 90.365 kb on + strandat 90.365 kb on + strandat 90.366 kb on - strandat 90.366 kb on - strandat 90.366 kb on - strandat 90.366 kb on - strandat 90.366 kb on - strandat 90.366 kb on - strandat 90.366 kb on - strandat 90.447 kb on + strandat 90.447 kb on + strandat 90.448 kb on - strandat 90.448 kb on - strandat 90.448 kb on - strandat 90.577 kb on + strand, within GFF2042at 90.577 kb on + strand, within GFF2042at 90.577 kb on + strand, within GFF2042at 90.577 kb on + strand, within GFF2042at 90.577 kb on + strand, within GFF2042at 90.577 kb on + strand, within GFF2042at 90.578 kb on - strand, within GFF2042at 90.578 kb on - strand, within GFF2042at 90.578 kb on - strand, within GFF2042at 90.578 kb on - strand, within GFF2042at 90.578 kb on - strand, within GFF2042at 90.578 kb on - strand, within GFF2042at 90.578 kb on - strand, within GFF2042at 90.578 kb on - strand, within GFF2042at 90.578 kb on - strand, within GFF2042at 90.786 kb on + strand, within GFF2042at 90.786 kb on + strand, within GFF2042at 90.786 kb on + strand, within GFF2042at 90.786 kb on + strand, within GFF2042at 90.786 kb on + strand, within GFF2042at 90.786 kb on + strand, within GFF2042at 90.786 kb on + strand, within GFF2042at 90.787 kb on - strand, within GFF2042at 90.787 kb on - strand, within GFF2042at 90.787 kb on - strand, within GFF2042at 90.787 kb on - strand, within GFF2042at 90.787 kb on - strand, within GFF2042at 90.787 kb on - strand, within GFF2042at 91.377 kb on + strandat 91.377 kb on + strandat 91.378 kb on - strandat 91.378 kb on - strandat 91.378 kb on - strandat 91.433 kb on + strandat 91.433 kb on + strandat 91.433 kb on + strandat 91.433 kb on + strandat 91.433 kb on + strandat 91.434 kb on - strandat 91.434 kb on - strandat 91.434 kb on - strandat 91.553 kb on + strand, within GFF2043at 91.553 kb on + strand, within GFF2043at 91.607 kb on + strand, within GFF2043at 91.607 kb on + strand, within GFF2043at 91.607 kb on + strand, within GFF2043at 91.607 kb on + strand, within GFF2043at 91.607 kb on + strand, within GFF2043at 91.607 kb on + strand, within GFF2043at 91.607 kb on + strand, within GFF2043at 91.607 kb on + strand, within GFF2043at 91.607 kb on + strand, within GFF2043at 91.608 kb on - strand, within GFF2043at 91.608 kb on - strand, within GFF2043at 91.608 kb on - strand, within GFF2043at 91.608 kb on - strand, within GFF2043at 91.608 kb on - strand, within GFF2043at 91.608 kb on - strand, within GFF2043at 91.608 kb on - strand, within GFF2043at 91.608 kb on - strand, within GFF2043at 91.608 kb on - strand, within GFF2043at 91.608 kb on - strand, within GFF2043at 91.608 kb on - strand, within GFF2043at 91.608 kb on - strand, within GFF2043at 91.608 kb on - strand, within GFF2043at 91.608 kb on - strand, within GFF2043at 91.697 kb on + strand, within GFF2043at 91.697 kb on + strand, within GFF2043at 91.697 kb on + strand, within GFF2043at 91.698 kb on - strand, within GFF2043at 91.698 kb on - strand, within GFF2043at 91.698 kb on - strand, within GFF2043at 91.698 kb on - strand, within GFF2043at 91.698 kb on - strand, within GFF2043at 91.724 kb on + strand, within GFF2043at 91.724 kb on + strand, within GFF2043at 91.724 kb on + strand, within GFF2043at 91.724 kb on + strand, within GFF2043at 91.724 kb on + strand, within GFF2043at 91.937 kb on - strand, within GFF2043at 91.937 kb on - strand, within GFF2043at 91.937 kb on - strand, within GFF2043at 92.108 kb on + strand, within GFF2043at 92.108 kb on + strand, within GFF2043at 92.108 kb on + strand, within GFF2043at 92.108 kb on + strand, within GFF2043at 92.108 kb on + strand, within GFF2043at 92.108 kb on + strand, within GFF2043at 92.109 kb on - strand, within GFF2043at 92.109 kb on - strand, within GFF2043at 92.109 kb on - strand, within GFF2043at 92.109 kb on - strand, within GFF2043at 92.346 kb on + strandat 92.347 kb on - strandat 92.347 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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89,426 + +0.3
89,426 + +0.1
89,426 + +0.7
89,427 - +0.6
89,479 + -0.5
89,479 + -0.9
89,479 + +0.2
89,479 + -0.8
89,479 + -0.9
89,479 + +0.1
89,479 + +0.5
89,479 + -1.3
89,480 - +0.0
89,480 - +0.6
89,480 - -1.1
89,480 - +0.2
89,480 - -0.0
89,551 + +0.1
89,552 - -0.4
89,552 - +0.2
89,552 - -0.4
89,552 - -0.1
89,552 - +0.7
89,659 + GFF2041 0.22 -0.3
89,659 + GFF2041 0.22 -0.6
89,659 + GFF2041 0.22 -0.2
89,659 + GFF2041 0.22 -0.0
89,659 + GFF2041 0.22 -0.1
89,660 - GFF2041 0.22 +1.3
89,660 - GFF2041 0.22 -1.3
89,660 - GFF2041 0.22 -0.3
89,660 - GFF2041 0.22 -0.9
89,749 + GFF2041 0.32 -1.1
89,992 + GFF2041 0.62 -0.6
89,992 + GFF2041 0.62 -1.6
89,993 - GFF2041 0.62 +0.1
89,993 - GFF2041 0.62 +0.1
90,365 + -0.5
90,365 + -0.3
90,365 + +0.3
90,365 + +1.0
90,365 + +0.3
90,365 + +0.9
90,365 + -0.9
90,366 - -0.7
90,366 - -0.3
90,366 - +0.1
90,366 - +0.9
90,366 - +1.3
90,366 - -2.1
90,366 - +0.2
90,447 + -0.6
90,447 + +1.7
90,448 - +0.3
90,448 - -0.1
90,448 - -0.3
90,577 + GFF2042 0.17 +0.9
90,577 + GFF2042 0.17 +0.2
90,577 + GFF2042 0.17 -0.9
90,577 + GFF2042 0.17 -0.4
90,577 + GFF2042 0.17 -1.4
90,577 + GFF2042 0.17 +0.5
90,578 - GFF2042 0.17 -0.6
90,578 - GFF2042 0.17 +0.4
90,578 - GFF2042 0.17 +0.6
90,578 - GFF2042 0.17 +0.2
90,578 - GFF2042 0.17 +0.0
90,578 - GFF2042 0.17 +0.1
90,578 - GFF2042 0.17 +1.2
90,578 - GFF2042 0.17 +0.8
90,578 - GFF2042 0.17 +0.7
90,786 + GFF2042 0.38 +0.4
90,786 + GFF2042 0.38 -0.3
90,786 + GFF2042 0.38 +1.0
90,786 + GFF2042 0.38 +0.2
90,786 + GFF2042 0.38 +1.2
90,786 + GFF2042 0.38 +0.1
90,786 + GFF2042 0.38 +0.1
90,787 - GFF2042 0.38 +1.3
90,787 - GFF2042 0.38 +0.3
90,787 - GFF2042 0.38 -0.4
90,787 - GFF2042 0.38 +0.4
90,787 - GFF2042 0.38 -1.6
90,787 - GFF2042 0.38 -0.9
91,377 + -0.8
91,377 + -1.0
91,378 - -0.7
91,378 - -0.3
91,378 - -0.4
91,433 + +0.7
91,433 + +0.1
91,433 + +0.1
91,433 + +1.7
91,433 + -0.3
91,434 - +0.0
91,434 - -0.0
91,434 - +0.2
91,553 + GFF2043 0.18 +0.7
91,553 + GFF2043 0.18 -0.5
91,607 + GFF2043 0.24 +1.1
91,607 + GFF2043 0.24 -0.1
91,607 + GFF2043 0.24 -0.0
91,607 + GFF2043 0.24 -2.0
91,607 + GFF2043 0.24 +0.9
91,607 + GFF2043 0.24 -0.1
91,607 + GFF2043 0.24 +0.0
91,607 + GFF2043 0.24 -1.2
91,607 + GFF2043 0.24 +0.4
91,608 - GFF2043 0.24 -1.0
91,608 - GFF2043 0.24 +0.5
91,608 - GFF2043 0.24 -0.3
91,608 - GFF2043 0.24 -0.0
91,608 - GFF2043 0.24 -1.1
91,608 - GFF2043 0.24 -1.0
91,608 - GFF2043 0.24 -0.1
91,608 - GFF2043 0.24 -0.3
91,608 - GFF2043 0.24 -2.0
91,608 - GFF2043 0.24 +0.7
91,608 - GFF2043 0.24 -0.6
91,608 - GFF2043 0.24 -0.3
91,608 - GFF2043 0.24 +0.1
91,608 - GFF2043 0.24 +0.1
91,697 + GFF2043 0.35 -1.1
91,697 + GFF2043 0.35 -0.4
91,697 + GFF2043 0.35 +1.0
91,698 - GFF2043 0.35 +1.9
91,698 - GFF2043 0.35 -0.1
91,698 - GFF2043 0.35 -0.2
91,698 - GFF2043 0.35 +1.1
91,698 - GFF2043 0.35 -0.7
91,724 + GFF2043 0.38 -0.3
91,724 + GFF2043 0.38 +0.0
91,724 + GFF2043 0.38 -0.3
91,724 + GFF2043 0.38 -0.2
91,724 + GFF2043 0.38 +0.3
91,937 - GFF2043 0.64 +0.4
91,937 - GFF2043 0.64 +0.3
91,937 - GFF2043 0.64 +0.1
92,108 + GFF2043 0.84 +0.7
92,108 + GFF2043 0.84 +0.7
92,108 + GFF2043 0.84 +0.1
92,108 + GFF2043 0.84 -0.7
92,108 + GFF2043 0.84 -1.5
92,108 + GFF2043 0.84 +0.1
92,109 - GFF2043 0.84 +0.1
92,109 - GFF2043 0.84 -0.8
92,109 - GFF2043 0.84 -0.6
92,109 - GFF2043 0.84 -0.2
92,346 + -0.5
92,347 - -0.2
92,347 - -0.5

Or see this region's nucleotide sequence