Strain Fitness in Variovorax sp. SCN45 around GFF1989

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1988 and GFF1989 are separated by 29 nucleotidesGFF1989 and GFF1990 are separated by 120 nucleotidesGFF1990 and GFF1991 are separated by 30 nucleotides GFF1988 - Serine/threonine protein kinase, at 29,532 to 30,842 GFF1988 GFF1989 - MBL-fold metallo-hydrolase superfamily, at 30,872 to 31,942 GFF1989 GFF1990 - Transcriptional regulator, MerR family, at 32,063 to 32,458 GFF1990 GFF1991 - Carbonic anhydrase, beta class (EC 4.2.1.1), at 32,489 to 33,229 GFF1991 Position (kb) 30 31 32Strain fitness (log2 ratio) -2 -1 0 1 2at 29.920 kb on + strand, within GFF1988at 29.921 kb on - strand, within GFF1988at 29.921 kb on - strand, within GFF1988at 30.599 kb on + strand, within GFF1988at 30.599 kb on + strand, within GFF1988at 30.599 kb on + strand, within GFF1988at 30.599 kb on + strand, within GFF1988at 30.599 kb on + strand, within GFF1988at 30.599 kb on + strand, within GFF1988at 30.599 kb on + strand, within GFF1988at 30.599 kb on + strand, within GFF1988at 30.599 kb on + strand, within GFF1988at 30.600 kb on - strand, within GFF1988at 30.600 kb on - strand, within GFF1988at 30.600 kb on - strand, within GFF1988at 30.853 kb on + strandat 30.854 kb on - strandat 30.903 kb on + strandat 30.904 kb on - strandat 30.904 kb on - strandat 31.320 kb on + strand, within GFF1989at 31.320 kb on + strand, within GFF1989at 31.394 kb on - strand, within GFF1989at 31.394 kb on - strand, within GFF1989at 31.449 kb on + strand, within GFF1989at 31.452 kb on + strand, within GFF1989at 31.452 kb on + strand, within GFF1989at 31.452 kb on + strand, within GFF1989at 31.452 kb on + strand, within GFF1989at 31.452 kb on + strand, within GFF1989at 31.452 kb on + strand, within GFF1989at 31.452 kb on + strand, within GFF1989at 31.453 kb on - strand, within GFF1989at 31.453 kb on - strand, within GFF1989at 31.453 kb on - strand, within GFF1989at 31.453 kb on - strand, within GFF1989at 31.453 kb on - strand, within GFF1989at 31.453 kb on - strand, within GFF1989at 31.581 kb on + strand, within GFF1989at 31.581 kb on + strand, within GFF1989at 31.581 kb on + strand, within GFF1989at 31.582 kb on - strand, within GFF1989at 31.582 kb on - strand, within GFF1989at 31.582 kb on - strand, within GFF1989at 31.582 kb on - strand, within GFF1989at 31.582 kb on - strand, within GFF1989at 31.582 kb on - strand, within GFF1989at 31.872 kb on + strandat 31.945 kb on - strandat 31.945 kb on - strandat 31.957 kb on + strandat 31.989 kb on + strandat 31.989 kb on + strandat 31.989 kb on + strandat 31.989 kb on + strandat 31.989 kb on + strandat 31.989 kb on + strandat 31.989 kb on + strandat 31.990 kb on - strandat 31.990 kb on - strandat 31.990 kb on - strandat 31.990 kb on - strandat 31.990 kb on - strandat 31.990 kb on - strandat 31.990 kb on - strandat 31.990 kb on - strandat 32.135 kb on + strand, within GFF1990at 32.135 kb on + strand, within GFF1990at 32.135 kb on + strand, within GFF1990at 32.135 kb on + strand, within GFF1990at 32.135 kb on + strand, within GFF1990at 32.136 kb on - strand, within GFF1990at 32.136 kb on - strand, within GFF1990at 32.136 kb on - strand, within GFF1990at 32.136 kb on - strand, within GFF1990at 32.136 kb on - strand, within GFF1990at 32.136 kb on - strand, within GFF1990at 32.186 kb on + strand, within GFF1990at 32.186 kb on + strand, within GFF1990at 32.186 kb on + strand, within GFF1990at 32.186 kb on + strand, within GFF1990at 32.186 kb on + strand, within GFF1990at 32.187 kb on - strand, within GFF1990at 32.187 kb on - strand, within GFF1990at 32.187 kb on - strand, within GFF1990at 32.187 kb on - strand, within GFF1990at 32.187 kb on - strand, within GFF1990at 32.187 kb on - strand, within GFF1990at 32.279 kb on + strand, within GFF1990at 32.279 kb on + strand, within GFF1990at 32.279 kb on + strand, within GFF1990at 32.279 kb on + strand, within GFF1990at 32.279 kb on + strand, within GFF1990at 32.279 kb on + strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.280 kb on - strand, within GFF1990at 32.352 kb on + strand, within GFF1990at 32.352 kb on + strand, within GFF1990at 32.352 kb on + strand, within GFF1990at 32.353 kb on - strand, within GFF1990at 32.353 kb on - strand, within GFF1990at 32.480 kb on + strandat 32.480 kb on + strandat 32.480 kb on + strandat 32.488 kb on + strandat 32.488 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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29,920 + GFF1988 0.30 -0.7
29,921 - GFF1988 0.30 -0.3
29,921 - GFF1988 0.30 +0.9
30,599 + GFF1988 0.81 -1.1
30,599 + GFF1988 0.81 +0.2
30,599 + GFF1988 0.81 +0.3
30,599 + GFF1988 0.81 +0.5
30,599 + GFF1988 0.81 +0.1
30,599 + GFF1988 0.81 +0.7
30,599 + GFF1988 0.81 -0.5
30,599 + GFF1988 0.81 -0.7
30,599 + GFF1988 0.81 -0.3
30,600 - GFF1988 0.81 -0.3
30,600 - GFF1988 0.81 +1.1
30,600 - GFF1988 0.81 -0.4
30,853 + +0.7
30,854 - -0.1
30,903 + +0.5
30,904 - +0.6
30,904 - +0.1
31,320 + GFF1989 0.42 +0.2
31,320 + GFF1989 0.42 -0.5
31,394 - GFF1989 0.49 -0.3
31,394 - GFF1989 0.49 +1.9
31,449 + GFF1989 0.54 +0.4
31,452 + GFF1989 0.54 +1.3
31,452 + GFF1989 0.54 -1.1
31,452 + GFF1989 0.54 -0.4
31,452 + GFF1989 0.54 -1.5
31,452 + GFF1989 0.54 -0.7
31,452 + GFF1989 0.54 +0.6
31,452 + GFF1989 0.54 -0.4
31,453 - GFF1989 0.54 -1.1
31,453 - GFF1989 0.54 +2.3
31,453 - GFF1989 0.54 +0.0
31,453 - GFF1989 0.54 +0.2
31,453 - GFF1989 0.54 +0.0
31,453 - GFF1989 0.54 +0.0
31,581 + GFF1989 0.66 -0.2
31,581 + GFF1989 0.66 -0.0
31,581 + GFF1989 0.66 +0.4
31,582 - GFF1989 0.66 +0.6
31,582 - GFF1989 0.66 +1.7
31,582 - GFF1989 0.66 -0.5
31,582 - GFF1989 0.66 +0.3
31,582 - GFF1989 0.66 -0.3
31,582 - GFF1989 0.66 +1.2
31,872 + -0.1
31,945 - +0.7
31,945 - -0.1
31,957 + -0.4
31,989 + +0.7
31,989 + -0.2
31,989 + +1.0
31,989 + +0.6
31,989 + -0.5
31,989 + -0.2
31,989 + +0.4
31,990 - +0.1
31,990 - +0.1
31,990 - +0.9
31,990 - +1.1
31,990 - +1.7
31,990 - -0.0
31,990 - +1.7
31,990 - -0.7
32,135 + GFF1990 0.18 +0.1
32,135 + GFF1990 0.18 -0.3
32,135 + GFF1990 0.18 +0.7
32,135 + GFF1990 0.18 +1.0
32,135 + GFF1990 0.18 +0.6
32,136 - GFF1990 0.18 +1.0
32,136 - GFF1990 0.18 +1.3
32,136 - GFF1990 0.18 -0.6
32,136 - GFF1990 0.18 -0.2
32,136 - GFF1990 0.18 -1.3
32,136 - GFF1990 0.18 -0.3
32,186 + GFF1990 0.31 +0.3
32,186 + GFF1990 0.31 -0.7
32,186 + GFF1990 0.31 +0.2
32,186 + GFF1990 0.31 -0.8
32,186 + GFF1990 0.31 +0.1
32,187 - GFF1990 0.31 -0.1
32,187 - GFF1990 0.31 -0.4
32,187 - GFF1990 0.31 -1.9
32,187 - GFF1990 0.31 -0.0
32,187 - GFF1990 0.31 +1.1
32,187 - GFF1990 0.31 +0.3
32,279 + GFF1990 0.55 -1.2
32,279 + GFF1990 0.55 -0.6
32,279 + GFF1990 0.55 +0.0
32,279 + GFF1990 0.55 +0.4
32,279 + GFF1990 0.55 -0.6
32,279 + GFF1990 0.55 +0.6
32,280 - GFF1990 0.55 +0.1
32,280 - GFF1990 0.55 +0.4
32,280 - GFF1990 0.55 -0.1
32,280 - GFF1990 0.55 +0.5
32,280 - GFF1990 0.55 -0.8
32,280 - GFF1990 0.55 +0.0
32,280 - GFF1990 0.55 -0.3
32,280 - GFF1990 0.55 -1.9
32,280 - GFF1990 0.55 -0.2
32,280 - GFF1990 0.55 +0.3
32,280 - GFF1990 0.55 +0.6
32,280 - GFF1990 0.55 -0.1
32,280 - GFF1990 0.55 -0.8
32,352 + GFF1990 0.73 -0.7
32,352 + GFF1990 0.73 +0.4
32,352 + GFF1990 0.73 -0.8
32,353 - GFF1990 0.73 -0.1
32,353 - GFF1990 0.73 +0.4
32,480 + -0.1
32,480 + -0.4
32,480 + -1.3
32,488 + +0.1
32,488 + -0.5

Or see this region's nucleotide sequence