Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1871 and GFF1872 are separated by 36 nucleotides GFF1872 and GFF1873 are separated by 4 nucleotides
GFF1871 - Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.8.1), at 545,860 to 547,002
GFF1871
GFF1872 - no description, at 547,039 to 547,431
GFF1872
GFF1873 - KEGG: LacI family transcriptional regulator, at 547,436 to 548,446
GFF1873
Position (kb) 547
548 Strain fitness (log2 ratio) -2
-1
0
1 at 546.218 kb on + strand, within GFF1871 at 546.218 kb on + strand, within GFF1871 at 546.505 kb on + strand, within GFF1871 at 546.506 kb on - strand, within GFF1871 at 546.620 kb on + strand, within GFF1871 at 546.620 kb on + strand, within GFF1871 at 547.040 kb on + strand at 547.041 kb on - strand at 547.115 kb on + strand, within GFF1872 at 547.115 kb on + strand, within GFF1872 at 547.115 kb on + strand, within GFF1872 at 547.116 kb on - strand, within GFF1872 at 547.116 kb on - strand, within GFF1872 at 547.283 kb on + strand, within GFF1872 at 547.283 kb on + strand, within GFF1872 at 547.283 kb on + strand, within GFF1872 at 547.283 kb on + strand, within GFF1872 at 547.283 kb on + strand, within GFF1872 at 547.283 kb on + strand, within GFF1872 at 547.311 kb on - strand, within GFF1872 at 547.311 kb on - strand, within GFF1872 at 547.311 kb on - strand, within GFF1872 at 547.311 kb on - strand, within GFF1872 at 547.630 kb on - strand, within GFF1873 at 547.630 kb on - strand, within GFF1873 at 547.788 kb on + strand, within GFF1873 at 547.788 kb on + strand, within GFF1873 at 547.789 kb on - strand, within GFF1873 at 547.851 kb on + strand, within GFF1873 at 547.950 kb on + strand, within GFF1873 at 548.175 kb on + strand, within GFF1873 at 548.175 kb on + strand, within GFF1873
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 546,218 + GFF1871 0.31 -0.6 546,218 + GFF1871 0.31 -0.8 546,505 + GFF1871 0.56 +1.6 546,506 - GFF1871 0.57 -0.6 546,620 + GFF1871 0.66 -0.7 546,620 + GFF1871 0.66 -1.1 547,040 + -0.7 547,041 - +0.7 547,115 + GFF1872 0.19 +0.6 547,115 + GFF1872 0.19 -0.4 547,115 + GFF1872 0.19 -0.7 547,116 - GFF1872 0.20 -0.0 547,116 - GFF1872 0.20 -0.5 547,283 + GFF1872 0.62 -0.6 547,283 + GFF1872 0.62 +0.3 547,283 + GFF1872 0.62 -1.1 547,283 + GFF1872 0.62 -0.4 547,283 + GFF1872 0.62 -0.4 547,283 + GFF1872 0.62 -1.9 547,311 - GFF1872 0.69 -0.5 547,311 - GFF1872 0.69 +0.4 547,311 - GFF1872 0.69 -1.6 547,311 - GFF1872 0.69 -0.5 547,630 - GFF1873 0.19 -0.4 547,630 - GFF1873 0.19 -1.2 547,788 + GFF1873 0.35 +0.4 547,788 + GFF1873 0.35 +1.0 547,789 - GFF1873 0.35 +0.4 547,851 + GFF1873 0.41 -0.0 547,950 + GFF1873 0.51 -0.3 548,175 + GFF1873 0.73 +1.0 548,175 + GFF1873 0.73 +0.3
Or see this region's nucleotide sequence