Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF182 and GFF183 are separated by 193 nucleotides GFF183 and GFF184 are separated by 110 nucleotides GFF184 and GFF185 are separated by 470 nucleotides GFF185 and GFF186 are separated by 27 nucleotides
GFF182 - FIG00347566: hypothetical protein, at 212,984 to 214,801
GFF182
GFF183 - Virulence protein, at 214,995 to 215,351
GFF183
GFF184 - Adenylate cyclase (EC 4.6.1.1), at 215,462 to 216,349
GFF184
GFF185 - hypothetical protein, at 216,820 to 217,083
GFF185
GFF186 - Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13), at 217,111 to 218,085
GFF186
Position (kb) 215
216
217 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 214.548 kb on + strand, within GFF182 at 214.554 kb on + strand, within GFF182 at 214.872 kb on - strand at 214.911 kb on + strand at 214.911 kb on + strand at 214.922 kb on + strand at 215.011 kb on + strand at 215.011 kb on + strand at 215.011 kb on + strand at 215.011 kb on + strand at 215.011 kb on + strand at 215.011 kb on + strand at 215.011 kb on + strand at 215.011 kb on + strand at 215.011 kb on + strand at 215.011 kb on + strand at 215.011 kb on + strand at 215.012 kb on - strand at 215.012 kb on - strand at 215.012 kb on - strand at 215.014 kb on + strand at 215.014 kb on + strand at 215.014 kb on + strand at 215.015 kb on - strand at 215.015 kb on - strand at 215.015 kb on - strand at 215.015 kb on - strand at 215.036 kb on - strand, within GFF183 at 215.053 kb on + strand, within GFF183 at 215.054 kb on - strand, within GFF183 at 215.054 kb on - strand, within GFF183 at 215.056 kb on + strand, within GFF183 at 215.056 kb on + strand, within GFF183 at 215.057 kb on - strand, within GFF183 at 215.080 kb on + strand, within GFF183 at 215.080 kb on + strand, within GFF183 at 215.080 kb on + strand, within GFF183 at 215.080 kb on + strand, within GFF183 at 215.080 kb on + strand, within GFF183 at 215.080 kb on + strand, within GFF183 at 215.080 kb on + strand, within GFF183 at 215.080 kb on + strand, within GFF183 at 215.080 kb on + strand, within GFF183 at 215.080 kb on + strand, within GFF183 at 215.080 kb on + strand, within GFF183 at 215.080 kb on + strand, within GFF183 at 215.080 kb on + strand, within GFF183 at 215.080 kb on + strand, within GFF183 at 215.081 kb on - strand, within GFF183 at 215.081 kb on - strand, within GFF183 at 215.081 kb on - strand, within GFF183 at 215.081 kb on - strand, within GFF183 at 215.081 kb on - strand, within GFF183 at 215.081 kb on - strand, within GFF183 at 215.081 kb on - strand, within GFF183 at 215.098 kb on + strand, within GFF183 at 215.099 kb on - strand, within GFF183 at 215.101 kb on + strand, within GFF183 at 215.101 kb on + strand, within GFF183 at 215.101 kb on + strand, within GFF183 at 215.101 kb on + strand, within GFF183 at 215.102 kb on - strand, within GFF183 at 215.102 kb on - strand, within GFF183 at 215.102 kb on - strand, within GFF183 at 215.102 kb on - strand, within GFF183 at 215.125 kb on + strand, within GFF183 at 215.125 kb on + strand, within GFF183 at 215.125 kb on + strand, within GFF183 at 215.125 kb on + strand, within GFF183 at 215.126 kb on - strand, within GFF183 at 215.126 kb on - strand, within GFF183 at 215.126 kb on - strand, within GFF183 at 215.126 kb on - strand, within GFF183 at 215.126 kb on - strand, within GFF183 at 215.126 kb on - strand, within GFF183 at 215.146 kb on + strand, within GFF183 at 215.146 kb on + strand, within GFF183 at 215.146 kb on + strand, within GFF183 at 215.146 kb on + strand, within GFF183 at 215.146 kb on + strand, within GFF183 at 215.146 kb on + strand, within GFF183 at 215.147 kb on - strand, within GFF183 at 215.147 kb on - strand, within GFF183 at 215.147 kb on - strand, within GFF183 at 215.147 kb on - strand, within GFF183 at 215.147 kb on - strand, within GFF183 at 215.147 kb on - strand, within GFF183 at 215.147 kb on - strand, within GFF183 at 215.147 kb on - strand, within GFF183 at 215.147 kb on - strand, within GFF183 at 215.149 kb on + strand, within GFF183 at 215.149 kb on + strand, within GFF183 at 215.149 kb on + strand, within GFF183 at 215.149 kb on + strand, within GFF183 at 215.149 kb on + strand, within GFF183 at 215.149 kb on + strand, within GFF183 at 215.149 kb on + strand, within GFF183 at 215.150 kb on - strand, within GFF183 at 215.150 kb on - strand, within GFF183 at 215.150 kb on - strand, within GFF183 at 215.150 kb on - strand, within GFF183 at 215.150 kb on - strand, within GFF183 at 215.150 kb on - strand, within GFF183 at 215.150 kb on - strand, within GFF183 at 215.150 kb on - strand, within GFF183 at 215.150 kb on - strand, within GFF183 at 215.150 kb on - strand, within GFF183 at 215.150 kb on - strand, within GFF183 at 215.150 kb on - strand, within GFF183 at 215.150 kb on - strand, within GFF183 at 215.150 kb on - strand, within GFF183 at 215.150 kb on - strand, within GFF183 at 215.170 kb on + strand, within GFF183 at 215.170 kb on + strand, within GFF183 at 215.170 kb on + strand, within GFF183 at 215.170 kb on + strand, within GFF183 at 215.171 kb on - strand, within GFF183 at 215.171 kb on - strand, within GFF183 at 215.171 kb on - strand, within GFF183 at 215.171 kb on - strand, within GFF183 at 215.171 kb on - strand, within GFF183 at 215.171 kb on - strand, within GFF183 at 215.171 kb on - strand, within GFF183 at 215.188 kb on + strand, within GFF183 at 215.188 kb on + strand, within GFF183 at 215.189 kb on - strand, within GFF183 at 215.191 kb on + strand, within GFF183 at 215.191 kb on + strand, within GFF183 at 215.191 kb on + strand, within GFF183 at 215.191 kb on + strand, within GFF183 at 215.191 kb on + strand, within GFF183 at 215.191 kb on + strand, within GFF183 at 215.191 kb on + strand, within GFF183 at 215.191 kb on + strand, within GFF183 at 215.191 kb on + strand, within GFF183 at 215.191 kb on + strand, within GFF183 at 215.192 kb on - strand, within GFF183 at 215.192 kb on - strand, within GFF183 at 215.192 kb on - strand, within GFF183 at 215.192 kb on - strand, within GFF183 at 215.192 kb on - strand, within GFF183 at 215.192 kb on - strand, within GFF183 at 215.192 kb on - strand, within GFF183 at 215.192 kb on - strand, within GFF183 at 215.192 kb on - strand, within GFF183 at 215.192 kb on - strand, within GFF183 at 215.221 kb on + strand, within GFF183 at 215.222 kb on - strand, within GFF183 at 215.222 kb on - strand, within GFF183 at 215.222 kb on - strand, within GFF183 at 215.402 kb on - strand at 215.402 kb on - strand at 215.402 kb on - strand at 215.430 kb on + strand at 215.430 kb on + strand at 215.430 kb on + strand at 215.431 kb on - strand at 215.431 kb on - strand at 215.658 kb on + strand, within GFF184 at 215.658 kb on + strand, within GFF184 at 215.658 kb on + strand, within GFF184 at 215.658 kb on + strand, within GFF184 at 215.658 kb on + strand, within GFF184 at 215.658 kb on + strand, within GFF184 at 215.658 kb on + strand, within GFF184 at 215.659 kb on - strand, within GFF184 at 215.659 kb on - strand, within GFF184 at 215.659 kb on - strand, within GFF184 at 215.659 kb on - strand, within GFF184 at 215.659 kb on - strand, within GFF184 at 215.659 kb on - strand, within GFF184 at 215.659 kb on - strand, within GFF184 at 215.723 kb on + strand, within GFF184 at 216.183 kb on + strand, within GFF184 at 216.183 kb on + strand, within GFF184 at 216.184 kb on - strand, within GFF184 at 216.184 kb on - strand, within GFF184 at 216.310 kb on + strand at 216.310 kb on + strand at 216.310 kb on + strand at 216.310 kb on + strand at 216.311 kb on - strand at 216.311 kb on - strand at 216.311 kb on - strand at 216.311 kb on - strand at 216.311 kb on - strand at 216.311 kb on - strand at 216.311 kb on - strand at 216.367 kb on + strand at 216.367 kb on + strand at 216.367 kb on + strand at 216.368 kb on - strand at 216.389 kb on + strand at 216.412 kb on + strand at 216.412 kb on + strand at 216.412 kb on + strand at 216.413 kb on - strand at 216.413 kb on - strand at 216.413 kb on - strand at 216.413 kb on - strand at 216.413 kb on - strand at 216.413 kb on - strand at 216.413 kb on - strand at 216.413 kb on - strand at 216.413 kb on - strand at 216.445 kb on - strand at 216.545 kb on - strand at 216.545 kb on - strand at 216.545 kb on - strand at 216.546 kb on + strand at 216.546 kb on + strand at 216.594 kb on + strand at 216.594 kb on + strand at 216.594 kb on + strand at 216.594 kb on + strand at 216.595 kb on - strand at 216.595 kb on - strand at 216.595 kb on - strand at 216.595 kb on - strand at 216.595 kb on - strand at 216.595 kb on - strand at 216.595 kb on - strand at 216.597 kb on + strand at 216.597 kb on + strand at 216.597 kb on + strand at 216.597 kb on + strand at 216.597 kb on + strand at 216.597 kb on + strand at 216.598 kb on - strand at 216.598 kb on - strand at 216.598 kb on - strand at 216.598 kb on - strand at 216.598 kb on - strand at 216.598 kb on - strand at 216.598 kb on - strand at 216.601 kb on + strand at 216.601 kb on + strand at 216.602 kb on - strand at 216.602 kb on - strand at 216.602 kb on - strand at 216.617 kb on - strand at 216.635 kb on + strand at 216.639 kb on + strand at 216.639 kb on + strand at 216.640 kb on - strand at 216.703 kb on + strand at 216.703 kb on + strand at 216.703 kb on + strand at 216.703 kb on + strand at 216.703 kb on + strand at 216.703 kb on + strand at 216.703 kb on + strand at 216.703 kb on + strand at 216.703 kb on + strand at 216.704 kb on - strand at 216.704 kb on - strand at 216.704 kb on - strand at 216.704 kb on - strand at 216.704 kb on - strand at 216.708 kb on + strand at 216.708 kb on + strand at 216.708 kb on + strand at 216.709 kb on - strand at 216.709 kb on - strand at 216.733 kb on + strand at 216.733 kb on + strand at 216.733 kb on + strand at 216.733 kb on + strand at 216.734 kb on - strand at 216.734 kb on - strand at 216.783 kb on - strand at 216.888 kb on + strand, within GFF185 at 216.931 kb on + strand, within GFF185 at 216.931 kb on + strand, within GFF185 at 216.931 kb on + strand, within GFF185 at 216.932 kb on - strand, within GFF185
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 214,548 + GFF182 0.86 +1.0 214,554 + GFF182 0.86 -0.1 214,872 - +1.0 214,911 + +0.4 214,911 + +0.1 214,922 + +2.5 215,011 + +1.5 215,011 + -0.9 215,011 + -0.4 215,011 + +0.6 215,011 + +0.1 215,011 + +3.1 215,011 + +0.2 215,011 + +0.8 215,011 + -0.2 215,011 + +0.8 215,011 + +1.5 215,012 - +0.9 215,012 - +0.3 215,012 - -0.1 215,014 + +0.1 215,014 + +1.2 215,014 + +0.7 215,015 - +0.5 215,015 - -0.2 215,015 - -1.6 215,015 - -0.3 215,036 - GFF183 0.11 +0.2 215,053 + GFF183 0.16 +0.3 215,054 - GFF183 0.17 -0.2 215,054 - GFF183 0.17 -0.6 215,056 + GFF183 0.17 -0.3 215,056 + GFF183 0.17 +0.6 215,057 - GFF183 0.17 -0.6 215,080 + GFF183 0.24 -0.8 215,080 + GFF183 0.24 +0.5 215,080 + GFF183 0.24 +0.1 215,080 + GFF183 0.24 +0.5 215,080 + GFF183 0.24 -0.5 215,080 + GFF183 0.24 +2.1 215,080 + GFF183 0.24 +0.8 215,080 + GFF183 0.24 +0.5 215,080 + GFF183 0.24 -0.5 215,080 + GFF183 0.24 +0.0 215,080 + GFF183 0.24 -1.5 215,080 + GFF183 0.24 -0.1 215,080 + GFF183 0.24 +0.2 215,080 + GFF183 0.24 -0.3 215,081 - GFF183 0.24 +0.5 215,081 - GFF183 0.24 +0.1 215,081 - GFF183 0.24 -0.1 215,081 - GFF183 0.24 +0.3 215,081 - GFF183 0.24 +0.1 215,081 - GFF183 0.24 +0.5 215,081 - GFF183 0.24 +0.2 215,098 + GFF183 0.29 -0.6 215,099 - GFF183 0.29 +2.5 215,101 + GFF183 0.30 +0.1 215,101 + GFF183 0.30 +0.1 215,101 + GFF183 0.30 +0.7 215,101 + GFF183 0.30 +0.4 215,102 - GFF183 0.30 -0.6 215,102 - GFF183 0.30 +0.1 215,102 - GFF183 0.30 -0.1 215,102 - GFF183 0.30 +0.6 215,125 + GFF183 0.36 +0.3 215,125 + GFF183 0.36 -0.2 215,125 + GFF183 0.36 +0.1 215,125 + GFF183 0.36 +0.1 215,126 - GFF183 0.37 +0.3 215,126 - GFF183 0.37 +1.1 215,126 - GFF183 0.37 -1.4 215,126 - GFF183 0.37 -0.8 215,126 - GFF183 0.37 -0.4 215,126 - GFF183 0.37 -0.7 215,146 + GFF183 0.42 +0.4 215,146 + GFF183 0.42 +0.6 215,146 + GFF183 0.42 -0.5 215,146 + GFF183 0.42 -0.1 215,146 + GFF183 0.42 +0.1 215,146 + GFF183 0.42 +0.3 215,147 - GFF183 0.43 -0.3 215,147 - GFF183 0.43 +0.1 215,147 - GFF183 0.43 +0.7 215,147 - GFF183 0.43 +0.5 215,147 - GFF183 0.43 +0.9 215,147 - GFF183 0.43 +0.1 215,147 - GFF183 0.43 +0.1 215,147 - GFF183 0.43 -1.1 215,147 - GFF183 0.43 -0.5 215,149 + GFF183 0.43 +0.0 215,149 + GFF183 0.43 -0.0 215,149 + GFF183 0.43 +0.0 215,149 + GFF183 0.43 +0.5 215,149 + GFF183 0.43 +0.9 215,149 + GFF183 0.43 +1.5 215,149 + GFF183 0.43 -0.1 215,150 - GFF183 0.43 -0.3 215,150 - GFF183 0.43 -0.1 215,150 - GFF183 0.43 -0.0 215,150 - GFF183 0.43 +0.2 215,150 - GFF183 0.43 +0.4 215,150 - GFF183 0.43 +0.1 215,150 - GFF183 0.43 +0.1 215,150 - GFF183 0.43 -1.1 215,150 - GFF183 0.43 +0.3 215,150 - GFF183 0.43 -0.4 215,150 - GFF183 0.43 -2.1 215,150 - GFF183 0.43 +0.1 215,150 - GFF183 0.43 +0.2 215,150 - GFF183 0.43 -0.1 215,150 - GFF183 0.43 -0.2 215,170 + GFF183 0.49 -0.6 215,170 + GFF183 0.49 +0.6 215,170 + GFF183 0.49 +0.7 215,170 + GFF183 0.49 +0.3 215,171 - GFF183 0.49 +0.4 215,171 - GFF183 0.49 -1.1 215,171 - GFF183 0.49 +0.3 215,171 - GFF183 0.49 +0.2 215,171 - GFF183 0.49 +1.1 215,171 - GFF183 0.49 +0.2 215,171 - GFF183 0.49 -1.5 215,188 + GFF183 0.54 +0.2 215,188 + GFF183 0.54 +0.8 215,189 - GFF183 0.54 +0.0 215,191 + GFF183 0.55 -0.1 215,191 + GFF183 0.55 -1.5 215,191 + GFF183 0.55 +0.3 215,191 + GFF183 0.55 -0.2 215,191 + GFF183 0.55 -1.2 215,191 + GFF183 0.55 +0.2 215,191 + GFF183 0.55 -0.1 215,191 + GFF183 0.55 +0.7 215,191 + GFF183 0.55 +0.6 215,191 + GFF183 0.55 +0.6 215,192 - GFF183 0.55 -0.1 215,192 - GFF183 0.55 -0.7 215,192 - GFF183 0.55 +0.5 215,192 - GFF183 0.55 -0.1 215,192 - GFF183 0.55 +0.2 215,192 - GFF183 0.55 -0.3 215,192 - GFF183 0.55 +0.9 215,192 - GFF183 0.55 +0.5 215,192 - GFF183 0.55 +0.8 215,192 - GFF183 0.55 +0.3 215,221 + GFF183 0.63 +0.8 215,222 - GFF183 0.64 -0.1 215,222 - GFF183 0.64 +0.2 215,222 - GFF183 0.64 -0.7 215,402 - +0.3 215,402 - -0.4 215,402 - -0.1 215,430 + +1.0 215,430 + +0.9 215,430 + +1.7 215,431 - +0.5 215,431 - +0.2 215,658 + GFF184 0.22 +0.7 215,658 + GFF184 0.22 +0.7 215,658 + GFF184 0.22 +0.2 215,658 + GFF184 0.22 +0.7 215,658 + GFF184 0.22 +1.1 215,658 + GFF184 0.22 +0.9 215,658 + GFF184 0.22 +0.4 215,659 - GFF184 0.22 +1.1 215,659 - GFF184 0.22 -0.7 215,659 - GFF184 0.22 -0.3 215,659 - GFF184 0.22 +0.5 215,659 - GFF184 0.22 +1.4 215,659 - GFF184 0.22 +1.1 215,659 - GFF184 0.22 +2.3 215,723 + GFF184 0.29 +1.2 216,183 + GFF184 0.81 +0.5 216,183 + GFF184 0.81 +1.8 216,184 - GFF184 0.81 +1.3 216,184 - GFF184 0.81 +0.5 216,310 + +0.9 216,310 + +0.4 216,310 + +0.3 216,310 + +0.9 216,311 - +0.2 216,311 - +0.9 216,311 - +0.5 216,311 - +0.9 216,311 - +1.5 216,311 - +1.0 216,311 - +0.9 216,367 + +1.0 216,367 + +0.3 216,367 + +0.6 216,368 - +0.3 216,389 + +0.2 216,412 + -0.3 216,412 + +1.0 216,412 + +0.4 216,413 - +1.1 216,413 - -0.7 216,413 - +0.9 216,413 - +0.9 216,413 - +0.5 216,413 - -0.4 216,413 - +0.6 216,413 - +0.4 216,413 - +0.2 216,445 - -0.8 216,545 - -1.1 216,545 - -1.5 216,545 - +0.2 216,546 + +1.0 216,546 + -0.4 216,594 + +1.3 216,594 + -0.1 216,594 + +1.3 216,594 + +0.4 216,595 - -1.1 216,595 - -0.8 216,595 - -1.8 216,595 - -2.4 216,595 - -1.3 216,595 - +0.5 216,595 - +0.9 216,597 + -0.9 216,597 + -0.8 216,597 + +1.1 216,597 + +0.4 216,597 + +0.4 216,597 + +0.0 216,598 - -2.6 216,598 - -2.1 216,598 - -2.0 216,598 - -1.4 216,598 - -2.0 216,598 - -0.8 216,598 - -1.0 216,601 + +0.2 216,601 + -1.3 216,602 - -1.5 216,602 - -1.5 216,602 - -2.7 216,617 - -0.5 216,635 + -0.0 216,639 + +0.3 216,639 + -0.1 216,640 - -1.1 216,703 + +0.6 216,703 + +0.1 216,703 + +1.5 216,703 + +0.8 216,703 + +0.0 216,703 + -0.3 216,703 + +0.1 216,703 + +0.9 216,703 + +0.0 216,704 - -1.5 216,704 - +2.1 216,704 - -3.4 216,704 - -3.1 216,704 - -1.3 216,708 + +0.4 216,708 + -0.1 216,708 + +0.9 216,709 - -1.1 216,709 - -1.8 216,733 + +0.1 216,733 + +0.5 216,733 + +0.7 216,733 + -0.1 216,734 - -1.7 216,734 - -2.0 216,783 - -2.3 216,888 + GFF185 0.26 +1.1 216,931 + GFF185 0.42 +0.6 216,931 + GFF185 0.42 +0.3 216,931 + GFF185 0.42 +0.5 216,932 - GFF185 0.42 -1.7
Or see this region's nucleotide sequence