Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1756 and GFF1757 are separated by 11 nucleotides GFF1757 and GFF1758 are separated by 137 nucleotides GFF1758 and GFF1759 are separated by 42 nucleotides
GFF1756 - hypothetical protein, at 418,973 to 419,272
GFF1756
GFF1757 - hypothetical protein, at 419,284 to 419,673
GFF1757
GFF1758 - KEGG: carboxymethylenebutenolidase , at 419,811 to 420,653
GFF1758
GFF1759 - PQQ-dependent oxidoreductase, gdhB family, at 420,696 to 421,922
GFF1759
Position (kb) 419
420
421 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 418.821 kb on + strand at 418.822 kb on - strand at 418.822 kb on - strand at 418.822 kb on - strand at 418.822 kb on - strand at 418.933 kb on + strand at 418.933 kb on + strand at 418.933 kb on + strand at 418.933 kb on + strand at 418.934 kb on - strand at 418.952 kb on + strand at 418.953 kb on - strand at 418.978 kb on + strand at 418.978 kb on + strand at 418.978 kb on + strand at 418.978 kb on + strand at 418.978 kb on + strand at 418.978 kb on + strand at 418.978 kb on + strand at 418.978 kb on + strand at 418.979 kb on - strand at 418.979 kb on - strand at 418.979 kb on - strand at 418.979 kb on - strand at 418.979 kb on - strand at 418.979 kb on - strand at 418.979 kb on - strand at 418.979 kb on - strand at 418.979 kb on - strand at 418.979 kb on - strand at 419.091 kb on - strand, within GFF1756 at 419.091 kb on - strand, within GFF1756 at 419.091 kb on - strand, within GFF1756 at 419.127 kb on - strand, within GFF1756 at 419.271 kb on - strand at 419.557 kb on + strand, within GFF1757 at 419.558 kb on - strand, within GFF1757 at 419.558 kb on - strand, within GFF1757 at 419.572 kb on + strand, within GFF1757 at 419.572 kb on + strand, within GFF1757 at 419.573 kb on - strand, within GFF1757 at 419.573 kb on - strand, within GFF1757 at 419.573 kb on - strand, within GFF1757 at 419.573 kb on - strand, within GFF1757 at 419.584 kb on + strand, within GFF1757 at 419.584 kb on + strand, within GFF1757 at 419.584 kb on + strand, within GFF1757 at 419.584 kb on + strand, within GFF1757 at 419.585 kb on - strand, within GFF1757 at 419.585 kb on - strand, within GFF1757 at 419.585 kb on - strand, within GFF1757 at 419.585 kb on - strand, within GFF1757 at 419.585 kb on - strand, within GFF1757 at 419.608 kb on + strand, within GFF1757 at 419.608 kb on + strand, within GFF1757 at 419.608 kb on + strand, within GFF1757 at 419.608 kb on + strand, within GFF1757 at 419.608 kb on + strand, within GFF1757 at 419.608 kb on + strand, within GFF1757 at 419.608 kb on + strand, within GFF1757 at 419.608 kb on + strand, within GFF1757 at 419.608 kb on + strand, within GFF1757 at 419.609 kb on - strand, within GFF1757 at 419.609 kb on - strand, within GFF1757 at 419.609 kb on - strand, within GFF1757 at 419.609 kb on - strand, within GFF1757 at 419.609 kb on - strand, within GFF1757 at 419.609 kb on - strand, within GFF1757 at 419.712 kb on - strand at 419.712 kb on - strand at 419.712 kb on - strand at 419.791 kb on + strand at 419.792 kb on - strand at 419.792 kb on - strand at 419.792 kb on - strand at 419.792 kb on - strand at 419.792 kb on - strand at 419.794 kb on + strand at 419.795 kb on - strand at 419.795 kb on - strand at 419.802 kb on + strand at 419.802 kb on + strand at 419.802 kb on + strand at 419.803 kb on - strand at 419.803 kb on - strand at 419.847 kb on + strand at 419.847 kb on + strand at 419.848 kb on - strand at 419.979 kb on + strand, within GFF1758 at 419.980 kb on - strand, within GFF1758 at 419.980 kb on - strand, within GFF1758 at 420.091 kb on - strand, within GFF1758 at 420.117 kb on + strand, within GFF1758 at 420.117 kb on + strand, within GFF1758 at 420.118 kb on - strand, within GFF1758 at 420.118 kb on - strand, within GFF1758 at 420.118 kb on - strand, within GFF1758 at 420.118 kb on - strand, within GFF1758 at 420.294 kb on + strand, within GFF1758 at 420.295 kb on - strand, within GFF1758 at 420.295 kb on - strand, within GFF1758 at 420.438 kb on + strand, within GFF1758 at 420.439 kb on - strand, within GFF1758 at 420.543 kb on + strand, within GFF1758 at 420.544 kb on - strand, within GFF1758 at 420.544 kb on - strand, within GFF1758 at 420.576 kb on - strand at 420.585 kb on + strand at 420.586 kb on - strand at 420.586 kb on - strand at 420.586 kb on - strand at 420.916 kb on + strand, within GFF1759 at 420.916 kb on + strand, within GFF1759 at 420.916 kb on + strand, within GFF1759 at 420.916 kb on + strand, within GFF1759 at 420.917 kb on - strand, within GFF1759 at 420.917 kb on - strand, within GFF1759 at 420.955 kb on + strand, within GFF1759 at 420.955 kb on + strand, within GFF1759 at 420.955 kb on + strand, within GFF1759 at 420.956 kb on - strand, within GFF1759 at 420.956 kb on - strand, within GFF1759 at 420.956 kb on - strand, within GFF1759 at 421.015 kb on + strand, within GFF1759 at 421.016 kb on - strand, within GFF1759 at 421.027 kb on + strand, within GFF1759 at 421.028 kb on - strand, within GFF1759 at 421.048 kb on + strand, within GFF1759 at 421.048 kb on + strand, within GFF1759 at 421.048 kb on + strand, within GFF1759 at 421.048 kb on + strand, within GFF1759 at 421.049 kb on - strand, within GFF1759 at 421.049 kb on - strand, within GFF1759 at 421.049 kb on - strand, within GFF1759 at 421.049 kb on - strand, within GFF1759 at 421.207 kb on + strand, within GFF1759 at 421.207 kb on + strand, within GFF1759 at 421.207 kb on + strand, within GFF1759 at 421.207 kb on + strand, within GFF1759 at 421.207 kb on + strand, within GFF1759 at 421.208 kb on - strand, within GFF1759 at 421.208 kb on - strand, within GFF1759 at 421.588 kb on + strand, within GFF1759 at 421.589 kb on - strand, within GFF1759 at 421.589 kb on - strand, within GFF1759 at 421.589 kb on - strand, within GFF1759 at 421.589 kb on - strand, within GFF1759 at 421.597 kb on + strand, within GFF1759 at 421.597 kb on + strand, within GFF1759 at 421.598 kb on - strand, within GFF1759 at 421.598 kb on - strand, within GFF1759 at 421.598 kb on - strand, within GFF1759 at 421.633 kb on + strand, within GFF1759 at 421.633 kb on + strand, within GFF1759 at 421.633 kb on + strand, within GFF1759 at 421.634 kb on - strand, within GFF1759
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 418,821 + +0.1 418,822 - +0.8 418,822 - -0.5 418,822 - -0.5 418,822 - -0.6 418,933 + -0.2 418,933 + -0.3 418,933 + +0.7 418,933 + +0.3 418,934 - -0.3 418,952 + +0.0 418,953 - -0.1 418,978 + +0.7 418,978 + +0.2 418,978 + -0.3 418,978 + +1.1 418,978 + -0.9 418,978 + -1.3 418,978 + +0.2 418,978 + -0.9 418,979 - -0.7 418,979 - +0.6 418,979 - +0.5 418,979 - -0.9 418,979 - -0.6 418,979 - -0.6 418,979 - -1.0 418,979 - -0.8 418,979 - -0.3 418,979 - +0.4 419,091 - GFF1756 0.39 -1.1 419,091 - GFF1756 0.39 -0.6 419,091 - GFF1756 0.39 -1.8 419,127 - GFF1756 0.51 -1.3 419,271 - -1.0 419,557 + GFF1757 0.70 +0.1 419,558 - GFF1757 0.70 +0.5 419,558 - GFF1757 0.70 +0.2 419,572 + GFF1757 0.74 -0.1 419,572 + GFF1757 0.74 -0.0 419,573 - GFF1757 0.74 +0.9 419,573 - GFF1757 0.74 -0.2 419,573 - GFF1757 0.74 +0.2 419,573 - GFF1757 0.74 -0.7 419,584 + GFF1757 0.77 -0.5 419,584 + GFF1757 0.77 -0.5 419,584 + GFF1757 0.77 -0.6 419,584 + GFF1757 0.77 +1.7 419,585 - GFF1757 0.77 +0.2 419,585 - GFF1757 0.77 -0.8 419,585 - GFF1757 0.77 -0.5 419,585 - GFF1757 0.77 +2.3 419,585 - GFF1757 0.77 -1.1 419,608 + GFF1757 0.83 +0.5 419,608 + GFF1757 0.83 +0.9 419,608 + GFF1757 0.83 -0.6 419,608 + GFF1757 0.83 -0.3 419,608 + GFF1757 0.83 -0.5 419,608 + GFF1757 0.83 +0.3 419,608 + GFF1757 0.83 +0.6 419,608 + GFF1757 0.83 -0.1 419,608 + GFF1757 0.83 -1.3 419,609 - GFF1757 0.83 -0.8 419,609 - GFF1757 0.83 -0.4 419,609 - GFF1757 0.83 -0.3 419,609 - GFF1757 0.83 +0.9 419,609 - GFF1757 0.83 -0.3 419,609 - GFF1757 0.83 -0.2 419,712 - +1.1 419,712 - +0.0 419,712 - -0.7 419,791 + -1.5 419,792 - +1.7 419,792 - -0.5 419,792 - +0.1 419,792 - -1.0 419,792 - -0.9 419,794 + +0.7 419,795 - -0.4 419,795 - +2.3 419,802 + -0.1 419,802 + +0.1 419,802 + -0.3 419,803 - -0.6 419,803 - -0.4 419,847 + +0.1 419,847 + -0.4 419,848 - -0.7 419,979 + GFF1758 0.20 -0.0 419,980 - GFF1758 0.20 +0.3 419,980 - GFF1758 0.20 -0.5 420,091 - GFF1758 0.33 -0.3 420,117 + GFF1758 0.36 +0.2 420,117 + GFF1758 0.36 -0.9 420,118 - GFF1758 0.36 -0.4 420,118 - GFF1758 0.36 +0.4 420,118 - GFF1758 0.36 -0.5 420,118 - GFF1758 0.36 +0.3 420,294 + GFF1758 0.57 +0.5 420,295 - GFF1758 0.57 -0.3 420,295 - GFF1758 0.57 -1.1 420,438 + GFF1758 0.74 -0.8 420,439 - GFF1758 0.74 +0.2 420,543 + GFF1758 0.87 +0.1 420,544 - GFF1758 0.87 -0.5 420,544 - GFF1758 0.87 +1.2 420,576 - -0.7 420,585 + +0.9 420,586 - -0.2 420,586 - -0.5 420,586 - -0.0 420,916 + GFF1759 0.18 -1.0 420,916 + GFF1759 0.18 -0.4 420,916 + GFF1759 0.18 -0.1 420,916 + GFF1759 0.18 -1.8 420,917 - GFF1759 0.18 -0.5 420,917 - GFF1759 0.18 -1.5 420,955 + GFF1759 0.21 -2.1 420,955 + GFF1759 0.21 -1.6 420,955 + GFF1759 0.21 -0.6 420,956 - GFF1759 0.21 -0.8 420,956 - GFF1759 0.21 -0.4 420,956 - GFF1759 0.21 -1.8 421,015 + GFF1759 0.26 -0.3 421,016 - GFF1759 0.26 -0.8 421,027 + GFF1759 0.27 -0.4 421,028 - GFF1759 0.27 -0.1 421,048 + GFF1759 0.29 +0.3 421,048 + GFF1759 0.29 -0.2 421,048 + GFF1759 0.29 -1.1 421,048 + GFF1759 0.29 -0.4 421,049 - GFF1759 0.29 -0.4 421,049 - GFF1759 0.29 +0.1 421,049 - GFF1759 0.29 -0.1 421,049 - GFF1759 0.29 -0.6 421,207 + GFF1759 0.42 +2.1 421,207 + GFF1759 0.42 +0.6 421,207 + GFF1759 0.42 -0.3 421,207 + GFF1759 0.42 -0.5 421,207 + GFF1759 0.42 +0.0 421,208 - GFF1759 0.42 +0.4 421,208 - GFF1759 0.42 +1.1 421,588 + GFF1759 0.73 -0.6 421,589 - GFF1759 0.73 +0.3 421,589 - GFF1759 0.73 -2.9 421,589 - GFF1759 0.73 -0.8 421,589 - GFF1759 0.73 +0.5 421,597 + GFF1759 0.73 -0.9 421,597 + GFF1759 0.73 +1.0 421,598 - GFF1759 0.74 -1.5 421,598 - GFF1759 0.74 +0.1 421,598 - GFF1759 0.74 +1.3 421,633 + GFF1759 0.76 -0.1 421,633 + GFF1759 0.76 +0.0 421,633 + GFF1759 0.76 -0.8 421,634 - GFF1759 0.76 +0.1
Or see this region's nucleotide sequence