Strain Fitness in Variovorax sp. SCN45 around GFF1693

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1692 and GFF1693 are separated by 102 nucleotidesGFF1693 and GFF1694 are separated by 65 nucleotides GFF1692 - Two-component system sensor histidine kinase, at 337,118 to 339,070 GFF1692 GFF1693 - Acetoacetyl-CoA reductase (EC 1.1.1.36), at 339,173 to 339,922 GFF1693 GFF1694 - Na+/H+-dicarboxylate symporter, at 339,988 to 341,337 GFF1694 Position (kb) 339 340Strain fitness (log2 ratio) -2 -1 0 1at 338.451 kb on + strand, within GFF1692at 338.452 kb on - strand, within GFF1692at 338.460 kb on + strand, within GFF1692at 338.461 kb on - strand, within GFF1692at 338.461 kb on - strand, within GFF1692at 338.461 kb on - strand, within GFF1692at 338.463 kb on + strand, within GFF1692at 338.463 kb on + strand, within GFF1692at 338.463 kb on + strand, within GFF1692at 338.464 kb on - strand, within GFF1692at 338.464 kb on - strand, within GFF1692at 338.464 kb on - strand, within GFF1692at 338.496 kb on + strand, within GFF1692at 338.497 kb on - strand, within GFF1692at 338.535 kb on + strand, within GFF1692at 338.535 kb on + strand, within GFF1692at 338.536 kb on - strand, within GFF1692at 338.625 kb on + strand, within GFF1692at 338.625 kb on + strand, within GFF1692at 338.625 kb on + strand, within GFF1692at 338.625 kb on + strand, within GFF1692at 338.625 kb on + strand, within GFF1692at 338.626 kb on - strand, within GFF1692at 338.626 kb on - strand, within GFF1692at 338.626 kb on - strand, within GFF1692at 338.626 kb on - strand, within GFF1692at 338.626 kb on - strand, within GFF1692at 338.626 kb on - strand, within GFF1692at 338.667 kb on + strand, within GFF1692at 338.758 kb on - strand, within GFF1692at 338.758 kb on - strand, within GFF1692at 338.931 kb on - strandat 338.931 kb on - strandat 338.931 kb on - strandat 339.122 kb on + strandat 339.133 kb on + strandat 339.134 kb on - strandat 339.151 kb on - strandat 339.247 kb on - strandat 339.363 kb on + strand, within GFF1693at 339.364 kb on - strand, within GFF1693at 339.459 kb on + strand, within GFF1693at 339.459 kb on + strand, within GFF1693at 339.459 kb on + strand, within GFF1693at 339.459 kb on + strand, within GFF1693at 339.459 kb on + strand, within GFF1693at 339.460 kb on - strand, within GFF1693at 339.724 kb on - strand, within GFF1693at 339.724 kb on - strand, within GFF1693at 339.816 kb on + strand, within GFF1693at 339.816 kb on + strand, within GFF1693at 339.817 kb on - strand, within GFF1693at 339.834 kb on + strand, within GFF1693at 339.835 kb on - strand, within GFF1693at 339.947 kb on + strandat 339.948 kb on - strandat 339.948 kb on - strandat 339.948 kb on - strandat 339.948 kb on - strandat 340.326 kb on + strand, within GFF1694at 340.326 kb on + strand, within GFF1694at 340.327 kb on - strand, within GFF1694at 340.327 kb on - strand, within GFF1694at 340.327 kb on - strand, within GFF1694at 340.327 kb on - strand, within GFF1694at 340.327 kb on - strand, within GFF1694at 340.327 kb on - strand, within GFF1694at 340.425 kb on - strand, within GFF1694at 340.553 kb on + strand, within GFF1694at 340.553 kb on + strand, within GFF1694at 340.553 kb on + strand, within GFF1694at 340.553 kb on + strand, within GFF1694at 340.553 kb on + strand, within GFF1694at 340.637 kb on + strand, within GFF1694at 340.637 kb on + strand, within GFF1694at 340.637 kb on + strand, within GFF1694at 340.638 kb on - strand, within GFF1694at 340.638 kb on - strand, within GFF1694at 340.686 kb on - strand, within GFF1694at 340.686 kb on - strand, within GFF1694at 340.686 kb on - strand, within GFF1694at 340.686 kb on - strand, within GFF1694at 340.745 kb on + strand, within GFF1694at 340.745 kb on + strand, within GFF1694at 340.745 kb on + strand, within GFF1694at 340.746 kb on - strand, within GFF1694

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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338,451 + GFF1692 0.68 -0.5
338,452 - GFF1692 0.68 -0.8
338,460 + GFF1692 0.69 +0.0
338,461 - GFF1692 0.69 -0.3
338,461 - GFF1692 0.69 -0.7
338,461 - GFF1692 0.69 -0.1
338,463 + GFF1692 0.69 -0.2
338,463 + GFF1692 0.69 -0.4
338,463 + GFF1692 0.69 -0.1
338,464 - GFF1692 0.69 -2.0
338,464 - GFF1692 0.69 -0.1
338,464 - GFF1692 0.69 +1.3
338,496 + GFF1692 0.71 +0.2
338,497 - GFF1692 0.71 -0.2
338,535 + GFF1692 0.73 -0.4
338,535 + GFF1692 0.73 -1.3
338,536 - GFF1692 0.73 -0.1
338,625 + GFF1692 0.77 -0.6
338,625 + GFF1692 0.77 -1.5
338,625 + GFF1692 0.77 +1.0
338,625 + GFF1692 0.77 +0.7
338,625 + GFF1692 0.77 -0.1
338,626 - GFF1692 0.77 -0.4
338,626 - GFF1692 0.77 +0.1
338,626 - GFF1692 0.77 -1.1
338,626 - GFF1692 0.77 -0.5
338,626 - GFF1692 0.77 -1.0
338,626 - GFF1692 0.77 -0.3
338,667 + GFF1692 0.79 -0.5
338,758 - GFF1692 0.84 -0.8
338,758 - GFF1692 0.84 -0.1
338,931 - +0.1
338,931 - -0.9
338,931 - +1.6
339,122 + +0.5
339,133 + +0.1
339,134 - -0.5
339,151 - -0.1
339,247 - +0.2
339,363 + GFF1693 0.25 +0.7
339,364 - GFF1693 0.25 +0.0
339,459 + GFF1693 0.38 -0.3
339,459 + GFF1693 0.38 -0.3
339,459 + GFF1693 0.38 +0.2
339,459 + GFF1693 0.38 -0.5
339,459 + GFF1693 0.38 -0.7
339,460 - GFF1693 0.38 -0.2
339,724 - GFF1693 0.73 +0.1
339,724 - GFF1693 0.73 +0.6
339,816 + GFF1693 0.86 +0.2
339,816 + GFF1693 0.86 +0.1
339,817 - GFF1693 0.86 -0.0
339,834 + GFF1693 0.88 +0.2
339,835 - GFF1693 0.88 +0.7
339,947 + -0.1
339,948 - -0.4
339,948 - -0.2
339,948 - -0.4
339,948 - -0.4
340,326 + GFF1694 0.25 -0.3
340,326 + GFF1694 0.25 +1.1
340,327 - GFF1694 0.25 -1.1
340,327 - GFF1694 0.25 -0.5
340,327 - GFF1694 0.25 +0.7
340,327 - GFF1694 0.25 -0.3
340,327 - GFF1694 0.25 +0.2
340,327 - GFF1694 0.25 +0.1
340,425 - GFF1694 0.32 +0.1
340,553 + GFF1694 0.42 +0.0
340,553 + GFF1694 0.42 +0.1
340,553 + GFF1694 0.42 +0.7
340,553 + GFF1694 0.42 -0.6
340,553 + GFF1694 0.42 +0.1
340,637 + GFF1694 0.48 +1.4
340,637 + GFF1694 0.48 -0.3
340,637 + GFF1694 0.48 -0.4
340,638 - GFF1694 0.48 -0.1
340,638 - GFF1694 0.48 +0.2
340,686 - GFF1694 0.52 -0.2
340,686 - GFF1694 0.52 -1.0
340,686 - GFF1694 0.52 +0.0
340,686 - GFF1694 0.52 -0.1
340,745 + GFF1694 0.56 -0.4
340,745 + GFF1694 0.56 -0.4
340,745 + GFF1694 0.56 +1.4
340,746 - GFF1694 0.56 -0.8

Or see this region's nucleotide sequence