Strain Fitness in Variovorax sp. SCN45 around GFF1660

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1659 and GFF1660 are separated by 23 nucleotidesGFF1660 and GFF1661 are separated by 17 nucleotidesGFF1661 and GFF1662 are separated by 316 nucleotides GFF1659 - Uncharacterized MFS-type transporter, at 301,083 to 302,249 GFF1659 GFF1660 - Type IV fimbrial biogenesis protein PilY1, at 302,273 to 304,027 GFF1660 GFF1661 - no description, at 304,045 to 304,251 GFF1661 GFF1662 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 304,568 to 306,055 GFF1662 Position (kb) 302 303 304 305Strain fitness (log2 ratio) -2 -1 0 1 2at 301.273 kb on - strand, within GFF1659at 301.273 kb on - strand, within GFF1659at 301.273 kb on - strand, within GFF1659at 301.281 kb on + strand, within GFF1659at 301.281 kb on + strand, within GFF1659at 301.282 kb on - strand, within GFF1659at 301.282 kb on - strand, within GFF1659at 301.753 kb on - strand, within GFF1659at 301.753 kb on - strand, within GFF1659at 301.773 kb on + strand, within GFF1659at 301.773 kb on + strand, within GFF1659at 301.773 kb on + strand, within GFF1659at 301.774 kb on - strand, within GFF1659at 301.774 kb on - strand, within GFF1659at 301.774 kb on - strand, within GFF1659at 301.774 kb on - strand, within GFF1659at 301.774 kb on - strand, within GFF1659at 301.791 kb on + strand, within GFF1659at 301.791 kb on + strand, within GFF1659at 301.791 kb on + strand, within GFF1659at 301.791 kb on + strand, within GFF1659at 301.791 kb on + strand, within GFF1659at 301.792 kb on - strand, within GFF1659at 301.792 kb on - strand, within GFF1659at 301.792 kb on - strand, within GFF1659at 301.792 kb on - strand, within GFF1659at 301.792 kb on - strand, within GFF1659at 301.792 kb on - strand, within GFF1659at 301.995 kb on + strand, within GFF1659at 301.995 kb on + strand, within GFF1659at 302.118 kb on + strand, within GFF1659at 302.118 kb on + strand, within GFF1659at 302.118 kb on + strand, within GFF1659at 302.118 kb on + strand, within GFF1659at 302.119 kb on - strand, within GFF1659at 302.119 kb on - strand, within GFF1659at 302.119 kb on - strand, within GFF1659at 302.245 kb on + strandat 302.245 kb on + strandat 302.245 kb on + strandat 302.247 kb on + strandat 302.247 kb on + strandat 302.247 kb on + strandat 302.247 kb on + strandat 302.247 kb on + strandat 302.248 kb on - strandat 302.248 kb on - strandat 302.248 kb on - strandat 302.248 kb on - strandat 302.370 kb on + strandat 302.370 kb on + strandat 302.370 kb on + strandat 302.370 kb on + strandat 302.371 kb on - strandat 302.409 kb on + strandat 302.409 kb on + strandat 302.410 kb on - strandat 302.410 kb on - strandat 302.554 kb on - strand, within GFF1660at 302.554 kb on - strand, within GFF1660at 302.823 kb on + strand, within GFF1660at 302.823 kb on + strand, within GFF1660at 302.823 kb on + strand, within GFF1660at 302.823 kb on + strand, within GFF1660at 302.824 kb on - strand, within GFF1660at 302.824 kb on - strand, within GFF1660at 302.824 kb on - strand, within GFF1660at 302.844 kb on + strand, within GFF1660at 302.844 kb on + strand, within GFF1660at 302.845 kb on - strand, within GFF1660at 302.845 kb on - strand, within GFF1660at 302.845 kb on - strand, within GFF1660at 302.880 kb on + strand, within GFF1660at 302.880 kb on + strand, within GFF1660at 302.880 kb on + strand, within GFF1660at 302.881 kb on - strand, within GFF1660at 302.994 kb on + strand, within GFF1660at 303.102 kb on + strand, within GFF1660at 303.102 kb on + strand, within GFF1660at 303.102 kb on + strand, within GFF1660at 303.102 kb on + strand, within GFF1660at 303.102 kb on + strand, within GFF1660at 303.103 kb on - strand, within GFF1660at 303.103 kb on - strand, within GFF1660at 303.103 kb on - strand, within GFF1660at 303.103 kb on - strand, within GFF1660at 303.438 kb on + strand, within GFF1660at 303.439 kb on - strand, within GFF1660at 303.459 kb on + strand, within GFF1660at 303.460 kb on - strand, within GFF1660at 303.460 kb on - strand, within GFF1660at 303.460 kb on - strand, within GFF1660at 303.460 kb on - strand, within GFF1660at 303.460 kb on - strand, within GFF1660at 303.460 kb on - strand, within GFF1660at 303.460 kb on - strand, within GFF1660at 303.460 kb on - strand, within GFF1660at 303.460 kb on - strand, within GFF1660at 303.504 kb on + strand, within GFF1660at 303.504 kb on + strand, within GFF1660at 303.505 kb on - strand, within GFF1660at 303.505 kb on - strand, within GFF1660at 303.505 kb on - strand, within GFF1660at 303.505 kb on - strand, within GFF1660at 303.945 kb on + strandat 303.945 kb on + strandat 303.945 kb on + strandat 303.945 kb on + strandat 303.946 kb on - strandat 303.946 kb on - strandat 303.946 kb on - strandat 303.946 kb on - strandat 303.946 kb on - strandat 303.946 kb on - strandat 303.946 kb on - strandat 303.946 kb on - strandat 304.008 kb on + strandat 304.008 kb on + strandat 304.008 kb on + strandat 304.008 kb on + strandat 304.008 kb on + strandat 304.008 kb on + strandat 304.008 kb on + strandat 304.009 kb on - strandat 304.009 kb on - strandat 304.009 kb on - strandat 304.009 kb on - strandat 304.009 kb on - strandat 304.009 kb on - strandat 304.009 kb on - strandat 304.047 kb on - strandat 304.047 kb on - strandat 304.080 kb on + strand, within GFF1661at 304.080 kb on + strand, within GFF1661at 304.081 kb on - strand, within GFF1661at 304.219 kb on + strand, within GFF1661at 304.283 kb on + strandat 304.283 kb on + strandat 304.283 kb on + strandat 304.283 kb on + strandat 304.284 kb on - strandat 304.289 kb on - strandat 304.332 kb on - strandat 304.332 kb on - strandat 304.342 kb on - strandat 304.342 kb on - strandat 304.342 kb on - strandat 304.484 kb on + strandat 304.484 kb on + strandat 304.485 kb on - strandat 304.485 kb on - strandat 304.485 kb on - strandat 304.488 kb on + strandat 304.488 kb on + strandat 304.489 kb on - strandat 304.659 kb on + strandat 304.890 kb on + strand, within GFF1662at 304.890 kb on + strand, within GFF1662at 304.890 kb on + strand, within GFF1662at 304.890 kb on + strand, within GFF1662at 304.890 kb on + strand, within GFF1662at 304.890 kb on + strand, within GFF1662at 304.891 kb on - strand, within GFF1662at 304.891 kb on - strand, within GFF1662at 304.891 kb on - strand, within GFF1662at 304.891 kb on - strand, within GFF1662

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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301,273 - GFF1659 0.16 -0.9
301,273 - GFF1659 0.16 +0.5
301,273 - GFF1659 0.16 -0.8
301,281 + GFF1659 0.17 +0.2
301,281 + GFF1659 0.17 -0.3
301,282 - GFF1659 0.17 +0.0
301,282 - GFF1659 0.17 +0.2
301,753 - GFF1659 0.57 -0.5
301,753 - GFF1659 0.57 +0.4
301,773 + GFF1659 0.59 -0.7
301,773 + GFF1659 0.59 +0.4
301,773 + GFF1659 0.59 +0.7
301,774 - GFF1659 0.59 -0.9
301,774 - GFF1659 0.59 +0.4
301,774 - GFF1659 0.59 -0.9
301,774 - GFF1659 0.59 +2.3
301,774 - GFF1659 0.59 -0.0
301,791 + GFF1659 0.61 -0.2
301,791 + GFF1659 0.61 +0.6
301,791 + GFF1659 0.61 -2.1
301,791 + GFF1659 0.61 -0.5
301,791 + GFF1659 0.61 +0.6
301,792 - GFF1659 0.61 -0.4
301,792 - GFF1659 0.61 -0.2
301,792 - GFF1659 0.61 -0.2
301,792 - GFF1659 0.61 -1.6
301,792 - GFF1659 0.61 -0.9
301,792 - GFF1659 0.61 -0.1
301,995 + GFF1659 0.78 +0.0
301,995 + GFF1659 0.78 -0.3
302,118 + GFF1659 0.89 -0.3
302,118 + GFF1659 0.89 -0.6
302,118 + GFF1659 0.89 -0.2
302,118 + GFF1659 0.89 -0.5
302,119 - GFF1659 0.89 -0.3
302,119 - GFF1659 0.89 +0.1
302,119 - GFF1659 0.89 +0.5
302,245 + +0.1
302,245 + -0.0
302,245 + +0.0
302,247 + -0.7
302,247 + +1.3
302,247 + +0.4
302,247 + -0.5
302,247 + +0.2
302,248 - +1.7
302,248 - -0.2
302,248 - -0.2
302,248 - -1.5
302,370 + -0.5
302,370 + -1.0
302,370 + -0.6
302,370 + +0.1
302,371 - -1.0
302,409 + +0.7
302,409 + +0.5
302,410 - +0.5
302,410 - -0.2
302,554 - GFF1660 0.16 +0.0
302,554 - GFF1660 0.16 +1.7
302,823 + GFF1660 0.31 +0.1
302,823 + GFF1660 0.31 -0.3
302,823 + GFF1660 0.31 -0.4
302,823 + GFF1660 0.31 -1.2
302,824 - GFF1660 0.31 -1.1
302,824 - GFF1660 0.31 -0.3
302,824 - GFF1660 0.31 -1.0
302,844 + GFF1660 0.33 -0.6
302,844 + GFF1660 0.33 +0.0
302,845 - GFF1660 0.33 -0.9
302,845 - GFF1660 0.33 -0.4
302,845 - GFF1660 0.33 +0.4
302,880 + GFF1660 0.35 +0.3
302,880 + GFF1660 0.35 -0.5
302,880 + GFF1660 0.35 -0.6
302,881 - GFF1660 0.35 -0.2
302,994 + GFF1660 0.41 +0.0
303,102 + GFF1660 0.47 -0.0
303,102 + GFF1660 0.47 -0.2
303,102 + GFF1660 0.47 -1.0
303,102 + GFF1660 0.47 -0.3
303,102 + GFF1660 0.47 -0.5
303,103 - GFF1660 0.47 +0.2
303,103 - GFF1660 0.47 -0.6
303,103 - GFF1660 0.47 -1.2
303,103 - GFF1660 0.47 -0.5
303,438 + GFF1660 0.66 -0.5
303,439 - GFF1660 0.66 +0.1
303,459 + GFF1660 0.68 +0.2
303,460 - GFF1660 0.68 -0.5
303,460 - GFF1660 0.68 -0.7
303,460 - GFF1660 0.68 +0.1
303,460 - GFF1660 0.68 -0.6
303,460 - GFF1660 0.68 -0.3
303,460 - GFF1660 0.68 -0.5
303,460 - GFF1660 0.68 +0.2
303,460 - GFF1660 0.68 -0.9
303,460 - GFF1660 0.68 -0.6
303,504 + GFF1660 0.70 -0.5
303,504 + GFF1660 0.70 +0.2
303,505 - GFF1660 0.70 -1.1
303,505 - GFF1660 0.70 +0.5
303,505 - GFF1660 0.70 +2.3
303,505 - GFF1660 0.70 +0.2
303,945 + -0.5
303,945 + -0.4
303,945 + -0.1
303,945 + +0.4
303,946 - +0.4
303,946 - -0.6
303,946 - -1.0
303,946 - +0.5
303,946 - -0.1
303,946 - +0.3
303,946 - -0.4
303,946 - -0.2
304,008 + +0.2
304,008 + -0.8
304,008 + -0.5
304,008 + +1.0
304,008 + -0.9
304,008 + -0.2
304,008 + +0.0
304,009 - -0.7
304,009 - -0.4
304,009 - -0.3
304,009 - +0.1
304,009 - -0.5
304,009 - -0.8
304,009 - -0.6
304,047 - +0.4
304,047 - +0.3
304,080 + GFF1661 0.17 +0.8
304,080 + GFF1661 0.17 +0.6
304,081 - GFF1661 0.17 -2.0
304,219 + GFF1661 0.84 +1.0
304,283 + -2.3
304,283 + -1.5
304,283 + -0.1
304,283 + -1.0
304,284 - -0.3
304,289 - -1.5
304,332 - -0.1
304,332 - +0.3
304,342 - -0.8
304,342 - -0.4
304,342 - -0.4
304,484 + -0.6
304,484 + +0.0
304,485 - -0.5
304,485 - -0.3
304,485 - +0.0
304,488 + -0.7
304,488 + +0.4
304,489 - -0.5
304,659 + -0.1
304,890 + GFF1662 0.22 +1.7
304,890 + GFF1662 0.22 -0.8
304,890 + GFF1662 0.22 +0.1
304,890 + GFF1662 0.22 -0.2
304,890 + GFF1662 0.22 +0.1
304,890 + GFF1662 0.22 +2.4
304,891 - GFF1662 0.22 -0.2
304,891 - GFF1662 0.22 +0.2
304,891 - GFF1662 0.22 -0.6
304,891 - GFF1662 0.22 -0.0

Or see this region's nucleotide sequence