Strain Fitness in Variovorax sp. SCN45 around GFF1365

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1364 and GFF1365 are separated by 28 nucleotidesGFF1365 and GFF1366 are separated by 72 nucleotides GFF1364 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 706,802 to 708,526 GFF1364 GFF1365 - no description, at 708,555 to 709,079 GFF1365 GFF1366 - Uncharacterized MFS-type transporter, at 709,152 to 710,342 GFF1366 Position (kb) 708 709 710Strain fitness (log2 ratio) -1 0 1 2at 707.805 kb on + strand, within GFF1364at 707.806 kb on - strand, within GFF1364at 707.806 kb on - strand, within GFF1364at 707.806 kb on - strand, within GFF1364at 708.169 kb on - strand, within GFF1364at 708.570 kb on + strandat 708.570 kb on + strandat 708.570 kb on + strandat 708.571 kb on - strandat 708.571 kb on - strandat 708.781 kb on + strand, within GFF1365at 708.781 kb on + strand, within GFF1365at 708.781 kb on + strand, within GFF1365at 708.781 kb on + strand, within GFF1365at 708.782 kb on - strand, within GFF1365at 708.782 kb on - strand, within GFF1365at 708.782 kb on - strand, within GFF1365at 708.788 kb on + strand, within GFF1365at 708.788 kb on + strand, within GFF1365at 708.788 kb on + strand, within GFF1365at 708.789 kb on - strand, within GFF1365at 708.789 kb on - strand, within GFF1365at 708.789 kb on - strand, within GFF1365at 708.800 kb on + strand, within GFF1365at 708.857 kb on - strand, within GFF1365at 708.991 kb on + strand, within GFF1365at 708.991 kb on + strand, within GFF1365at 708.991 kb on + strand, within GFF1365at 708.991 kb on + strand, within GFF1365at 708.992 kb on - strand, within GFF1365at 708.992 kb on - strand, within GFF1365at 708.992 kb on - strand, within GFF1365at 708.992 kb on - strand, within GFF1365at 708.992 kb on - strand, within GFF1365at 708.992 kb on - strand, within GFF1365at 708.992 kb on - strand, within GFF1365at 708.992 kb on - strand, within GFF1365at 708.992 kb on - strand, within GFF1365at 709.091 kb on + strandat 709.091 kb on + strandat 709.091 kb on + strandat 709.092 kb on - strandat 709.092 kb on - strandat 709.127 kb on + strandat 709.678 kb on + strand, within GFF1366at 709.678 kb on + strand, within GFF1366at 709.678 kb on + strand, within GFF1366at 709.678 kb on + strand, within GFF1366at 709.678 kb on + strand, within GFF1366at 709.678 kb on + strand, within GFF1366at 709.678 kb on + strand, within GFF1366at 709.678 kb on + strand, within GFF1366at 709.679 kb on - strand, within GFF1366at 709.679 kb on - strand, within GFF1366at 709.679 kb on - strand, within GFF1366at 709.679 kb on - strand, within GFF1366at 709.679 kb on - strand, within GFF1366at 710.071 kb on + strand, within GFF1366at 710.071 kb on + strand, within GFF1366

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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707,805 + GFF1364 0.58 -0.1
707,806 - GFF1364 0.58 +0.5
707,806 - GFF1364 0.58 +0.7
707,806 - GFF1364 0.58 -0.2
708,169 - GFF1364 0.79 -0.5
708,570 + -1.4
708,570 + -0.5
708,570 + -0.4
708,571 - -0.9
708,571 - +0.5
708,781 + GFF1365 0.43 +0.7
708,781 + GFF1365 0.43 +0.8
708,781 + GFF1365 0.43 +0.7
708,781 + GFF1365 0.43 -1.7
708,782 - GFF1365 0.43 -0.1
708,782 - GFF1365 0.43 +0.2
708,782 - GFF1365 0.43 +0.9
708,788 + GFF1365 0.44 -1.3
708,788 + GFF1365 0.44 -0.1
708,788 + GFF1365 0.44 -0.6
708,789 - GFF1365 0.45 -0.1
708,789 - GFF1365 0.45 -0.8
708,789 - GFF1365 0.45 +0.1
708,800 + GFF1365 0.47 +0.7
708,857 - GFF1365 0.58 +0.0
708,991 + GFF1365 0.83 +0.3
708,991 + GFF1365 0.83 +0.1
708,991 + GFF1365 0.83 +0.1
708,991 + GFF1365 0.83 -0.7
708,992 - GFF1365 0.83 -0.4
708,992 - GFF1365 0.83 +0.8
708,992 - GFF1365 0.83 -0.7
708,992 - GFF1365 0.83 -0.1
708,992 - GFF1365 0.83 -0.2
708,992 - GFF1365 0.83 +0.2
708,992 - GFF1365 0.83 +0.1
708,992 - GFF1365 0.83 -1.1
708,992 - GFF1365 0.83 +1.1
709,091 + -0.5
709,091 + +0.7
709,091 + -0.5
709,092 - +0.8
709,092 - +0.7
709,127 + -0.3
709,678 + GFF1366 0.44 -0.9
709,678 + GFF1366 0.44 +0.0
709,678 + GFF1366 0.44 +0.4
709,678 + GFF1366 0.44 +0.1
709,678 + GFF1366 0.44 -1.0
709,678 + GFF1366 0.44 -0.1
709,678 + GFF1366 0.44 +0.9
709,678 + GFF1366 0.44 +2.4
709,679 - GFF1366 0.44 -0.2
709,679 - GFF1366 0.44 -0.4
709,679 - GFF1366 0.44 -0.8
709,679 - GFF1366 0.44 +0.2
709,679 - GFF1366 0.44 -0.4
710,071 + GFF1366 0.77 +0.3
710,071 + GFF1366 0.77 -0.9

Or see this region's nucleotide sequence