Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1297 and GFF1298 are separated by 16 nucleotides GFF1298 and GFF1299 are separated by 22 nucleotides
GFF1297 - Chromosome partition protein smc, at 625,200 to 628,715
GFF1297
GFF1298 - Cell division protein, at 628,732 to 629,835
GFF1298
GFF1299 - DNA ligase (NAD(+)) (EC 6.5.1.2), at 629,858 to 631,942
GFF1299
Position (kb) 628
629
630 Strain fitness (log2 ratio) -2
-1
0
1
2 at 628.795 kb on + strand at 628.795 kb on + strand at 628.796 kb on - strand at 628.796 kb on - strand at 628.796 kb on - strand at 628.796 kb on - strand at 628.796 kb on - strand at 629.052 kb on + strand, within GFF1298 at 629.194 kb on + strand, within GFF1298 at 629.194 kb on + strand, within GFF1298 at 629.194 kb on + strand, within GFF1298 at 629.194 kb on + strand, within GFF1298 at 629.194 kb on + strand, within GFF1298 at 629.194 kb on + strand, within GFF1298 at 629.195 kb on - strand, within GFF1298 at 629.257 kb on + strand, within GFF1298 at 629.257 kb on + strand, within GFF1298 at 629.434 kb on + strand, within GFF1298 at 629.434 kb on + strand, within GFF1298 at 629.770 kb on + strand at 629.770 kb on + strand at 629.770 kb on + strand at 629.833 kb on + strand at 629.833 kb on + strand at 629.833 kb on + strand at 629.834 kb on - strand at 629.834 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 628,795 + -0.7 628,795 + -1.0 628,796 - -1.2 628,796 - +0.7 628,796 - -0.2 628,796 - -0.9 628,796 - +0.5 629,052 + GFF1298 0.29 -0.1 629,194 + GFF1298 0.42 -1.1 629,194 + GFF1298 0.42 -1.2 629,194 + GFF1298 0.42 -0.7 629,194 + GFF1298 0.42 -1.1 629,194 + GFF1298 0.42 -1.0 629,194 + GFF1298 0.42 -0.3 629,195 - GFF1298 0.42 -0.7 629,257 + GFF1298 0.48 -0.9 629,257 + GFF1298 0.48 -0.9 629,434 + GFF1298 0.64 +0.1 629,434 + GFF1298 0.64 -0.5 629,770 + -0.2 629,770 + -0.6 629,770 + +0.4 629,833 + -0.7 629,833 + -0.3 629,833 + -0.5 629,834 - -1.9 629,834 - +2.1
Or see this region's nucleotide sequence