Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1234 and GFF1235 are separated by 102 nucleotides GFF1235 and GFF1236 are separated by 104 nucleotides GFF1236 and GFF1237 are separated by 7 nucleotides GFF1237 and GFF1238 are separated by 98 nucleotides
GFF1234 - Peptide-methionine (S)-S-oxide reductase MsrA (EC 1.8.4.11), at 553,872 to 554,573
GFF1234
GFF1235 - Methionine sulfoxide reductase-associated methionine-rich protein, at 554,676 to 554,942
GFF1235
GFF1236 - Methionine sulfoxide reductase molybdopterin-binding subunit, at 555,047 to 555,838
GFF1236
GFF1237 - Methionine sulfoxide reductase cytochrome b subunit, at 555,846 to 556,502
GFF1237
GFF1238 - Two-component transcriptional response regulator, OmpR family, at 556,601 to 557,326
GFF1238
Position (kb) 555
556 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 554.075 kb on - strand, within GFF1234 at 554.075 kb on - strand, within GFF1234 at 554.104 kb on + strand, within GFF1234 at 554.104 kb on + strand, within GFF1234 at 554.104 kb on + strand, within GFF1234 at 554.105 kb on - strand, within GFF1234 at 554.105 kb on - strand, within GFF1234 at 554.105 kb on - strand, within GFF1234 at 554.105 kb on - strand, within GFF1234 at 554.105 kb on - strand, within GFF1234 at 554.158 kb on + strand, within GFF1234 at 554.158 kb on + strand, within GFF1234 at 554.221 kb on + strand, within GFF1234 at 554.222 kb on - strand, within GFF1234 at 554.242 kb on + strand, within GFF1234 at 554.263 kb on + strand, within GFF1234 at 554.264 kb on - strand, within GFF1234 at 554.264 kb on - strand, within GFF1234 at 554.264 kb on - strand, within GFF1234 at 554.347 kb on + strand, within GFF1234 at 554.518 kb on + strand at 554.677 kb on + strand at 554.677 kb on + strand at 554.678 kb on - strand at 554.678 kb on - strand at 554.678 kb on - strand at 555.069 kb on + strand at 555.069 kb on + strand at 555.088 kb on - strand at 555.099 kb on + strand at 555.099 kb on + strand at 555.100 kb on - strand at 555.144 kb on + strand, within GFF1236 at 555.145 kb on - strand, within GFF1236 at 555.145 kb on - strand, within GFF1236 at 555.186 kb on + strand, within GFF1236 at 555.186 kb on + strand, within GFF1236 at 555.270 kb on + strand, within GFF1236 at 555.270 kb on + strand, within GFF1236 at 555.270 kb on + strand, within GFF1236 at 555.270 kb on + strand, within GFF1236 at 555.270 kb on + strand, within GFF1236 at 555.270 kb on + strand, within GFF1236 at 555.271 kb on - strand, within GFF1236 at 555.271 kb on - strand, within GFF1236 at 555.271 kb on - strand, within GFF1236 at 555.273 kb on + strand, within GFF1236 at 555.273 kb on + strand, within GFF1236 at 555.273 kb on + strand, within GFF1236 at 555.274 kb on - strand, within GFF1236 at 555.274 kb on - strand, within GFF1236 at 555.300 kb on + strand, within GFF1236 at 555.300 kb on + strand, within GFF1236 at 555.300 kb on + strand, within GFF1236 at 555.300 kb on + strand, within GFF1236 at 555.301 kb on - strand, within GFF1236 at 555.301 kb on - strand, within GFF1236 at 555.301 kb on - strand, within GFF1236 at 555.301 kb on - strand, within GFF1236 at 555.489 kb on + strand, within GFF1236 at 555.489 kb on + strand, within GFF1236 at 555.489 kb on + strand, within GFF1236 at 555.490 kb on - strand, within GFF1236 at 555.528 kb on + strand, within GFF1236 at 555.528 kb on + strand, within GFF1236 at 555.528 kb on + strand, within GFF1236 at 555.529 kb on - strand, within GFF1236 at 555.529 kb on - strand, within GFF1236 at 555.531 kb on + strand, within GFF1236 at 555.532 kb on - strand, within GFF1236 at 555.573 kb on + strand, within GFF1236 at 555.574 kb on - strand, within GFF1236 at 556.079 kb on - strand, within GFF1237 at 556.079 kb on - strand, within GFF1237 at 556.102 kb on + strand, within GFF1237 at 556.103 kb on - strand, within GFF1237 at 556.228 kb on + strand, within GFF1237 at 556.228 kb on + strand, within GFF1237 at 556.228 kb on + strand, within GFF1237 at 556.228 kb on + strand, within GFF1237 at 556.228 kb on + strand, within GFF1237 at 556.228 kb on + strand, within GFF1237 at 556.229 kb on - strand, within GFF1237 at 556.351 kb on + strand, within GFF1237 at 556.555 kb on + strand at 556.555 kb on + strand at 556.556 kb on - strand at 556.556 kb on - strand at 556.556 kb on - strand at 556.685 kb on + strand, within GFF1238 at 556.685 kb on + strand, within GFF1238 at 556.826 kb on + strand, within GFF1238 at 556.826 kb on + strand, within GFF1238 at 556.826 kb on + strand, within GFF1238 at 556.827 kb on - strand, within GFF1238 at 556.827 kb on - strand, within GFF1238 at 556.827 kb on - strand, within GFF1238
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 554,075 - GFF1234 0.29 -1.1 554,075 - GFF1234 0.29 -1.4 554,104 + GFF1234 0.33 -0.3 554,104 + GFF1234 0.33 +0.6 554,104 + GFF1234 0.33 -0.3 554,105 - GFF1234 0.33 -1.1 554,105 - GFF1234 0.33 -0.6 554,105 - GFF1234 0.33 -1.2 554,105 - GFF1234 0.33 -0.7 554,105 - GFF1234 0.33 +0.7 554,158 + GFF1234 0.41 -0.8 554,158 + GFF1234 0.41 -0.7 554,221 + GFF1234 0.50 -0.1 554,222 - GFF1234 0.50 +0.0 554,242 + GFF1234 0.53 +0.8 554,263 + GFF1234 0.56 -1.0 554,264 - GFF1234 0.56 +0.1 554,264 - GFF1234 0.56 +0.9 554,264 - GFF1234 0.56 -0.4 554,347 + GFF1234 0.68 -0.4 554,518 + -0.2 554,677 + -0.1 554,677 + -1.3 554,678 - +0.0 554,678 - -0.4 554,678 - -1.2 555,069 + -1.7 555,069 + +0.5 555,088 - +0.2 555,099 + -0.4 555,099 + -0.4 555,100 - -0.1 555,144 + GFF1236 0.12 -0.6 555,145 - GFF1236 0.12 +0.0 555,145 - GFF1236 0.12 +0.5 555,186 + GFF1236 0.18 -0.3 555,186 + GFF1236 0.18 -0.9 555,270 + GFF1236 0.28 -0.5 555,270 + GFF1236 0.28 -0.6 555,270 + GFF1236 0.28 -0.0 555,270 + GFF1236 0.28 -0.8 555,270 + GFF1236 0.28 -0.5 555,270 + GFF1236 0.28 -2.7 555,271 - GFF1236 0.28 -0.3 555,271 - GFF1236 0.28 +0.2 555,271 - GFF1236 0.28 -1.3 555,273 + GFF1236 0.29 -1.2 555,273 + GFF1236 0.29 -1.5 555,273 + GFF1236 0.29 +0.7 555,274 - GFF1236 0.29 -1.3 555,274 - GFF1236 0.29 -0.3 555,300 + GFF1236 0.32 +0.5 555,300 + GFF1236 0.32 -1.6 555,300 + GFF1236 0.32 +0.2 555,300 + GFF1236 0.32 -0.4 555,301 - GFF1236 0.32 -0.3 555,301 - GFF1236 0.32 +0.2 555,301 - GFF1236 0.32 -0.3 555,301 - GFF1236 0.32 +0.0 555,489 + GFF1236 0.56 -1.3 555,489 + GFF1236 0.56 -0.3 555,489 + GFF1236 0.56 -0.4 555,490 - GFF1236 0.56 -0.8 555,528 + GFF1236 0.61 -0.5 555,528 + GFF1236 0.61 +0.2 555,528 + GFF1236 0.61 -0.5 555,529 - GFF1236 0.61 -0.3 555,529 - GFF1236 0.61 -0.6 555,531 + GFF1236 0.61 +0.1 555,532 - GFF1236 0.61 +0.1 555,573 + GFF1236 0.66 +0.4 555,574 - GFF1236 0.67 -1.2 556,079 - GFF1237 0.35 -0.1 556,079 - GFF1237 0.35 -0.5 556,102 + GFF1237 0.39 -0.3 556,103 - GFF1237 0.39 -0.5 556,228 + GFF1237 0.58 -0.2 556,228 + GFF1237 0.58 +0.5 556,228 + GFF1237 0.58 +2.5 556,228 + GFF1237 0.58 +0.0 556,228 + GFF1237 0.58 -0.1 556,228 + GFF1237 0.58 +0.0 556,229 - GFF1237 0.58 +0.1 556,351 + GFF1237 0.77 -2.9 556,555 + -1.1 556,555 + -1.3 556,556 - -1.2 556,556 - -0.1 556,556 - -0.5 556,685 + GFF1238 0.12 -0.1 556,685 + GFF1238 0.12 +0.5 556,826 + GFF1238 0.31 +0.2 556,826 + GFF1238 0.31 +0.7 556,826 + GFF1238 0.31 -1.3 556,827 - GFF1238 0.31 +0.5 556,827 - GFF1238 0.31 -0.3 556,827 - GFF1238 0.31 +0.6
Or see this region's nucleotide sequence