Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF120 and GFF121 are separated by 281 nucleotides GFF121 and GFF122 overlap by 4 nucleotides GFF122 and GFF123 overlap by 8 nucleotides
GFF120 - Two-component transcriptional response regulator, LuxR family, at 148,732 to 149,274
GFF120
GFF121 - Uncharacterized MFS-type transporter, at 149,556 to 150,818
GFF121
GFF122 - Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1), at 150,815 to 151,690
GFF122
GFF123 - Dihydroorotate dehydrogenase (NAD(+)), catalytic subunit (EC 1.3.1.14), at 151,683 to 152,633
GFF123
Position (kb) 149
150
151 Strain fitness (log2 ratio) -1
0
1 at 148.583 kb on + strand at 148.584 kb on - strand at 148.584 kb on - strand at 148.584 kb on - strand at 149.635 kb on - strand at 149.829 kb on + strand, within GFF121 at 149.829 kb on + strand, within GFF121 at 149.829 kb on + strand, within GFF121 at 149.829 kb on + strand, within GFF121 at 149.830 kb on - strand, within GFF121 at 150.027 kb on + strand, within GFF121 at 150.027 kb on + strand, within GFF121 at 150.310 kb on - strand, within GFF121 at 150.507 kb on + strand, within GFF121 at 150.508 kb on - strand, within GFF121 at 150.508 kb on - strand, within GFF121 at 150.753 kb on + strand at 150.753 kb on + strand at 150.753 kb on + strand at 150.754 kb on - strand at 150.754 kb on - strand at 150.995 kb on + strand, within GFF122 at 151.058 kb on + strand, within GFF122 at 151.059 kb on - strand, within GFF122 at 151.376 kb on + strand, within GFF122 at 151.460 kb on + strand, within GFF122 at 151.764 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 148,583 + +0.2 148,584 - -0.8 148,584 - -0.2 148,584 - +0.2 149,635 - +0.2 149,829 + GFF121 0.22 -0.5 149,829 + GFF121 0.22 +0.3 149,829 + GFF121 0.22 -0.4 149,829 + GFF121 0.22 -1.7 149,830 - GFF121 0.22 -0.5 150,027 + GFF121 0.37 -0.9 150,027 + GFF121 0.37 -0.6 150,310 - GFF121 0.60 +0.5 150,507 + GFF121 0.75 +0.0 150,508 - GFF121 0.75 -0.9 150,508 - GFF121 0.75 -0.4 150,753 + -0.4 150,753 + +1.1 150,753 + -0.2 150,754 - -0.3 150,754 - +0.2 150,995 + GFF122 0.21 +0.0 151,058 + GFF122 0.28 -0.8 151,059 - GFF122 0.28 +0.9 151,376 + GFF122 0.64 +0.2 151,460 + GFF122 0.74 -0.5 151,764 + -0.1
Or see this region's nucleotide sequence