Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1140 and GFF1141 are separated by 7 nucleotides GFF1141 and GFF1142 overlap by 1 nucleotides GFF1142 and GFF1143 are separated by 3 nucleotides GFF1143 and GFF1144 are separated by 38 nucleotides
GFF1140 - Domain of unknown function / Efflux ABC transporter, permease protein, at 455,408 to 456,592
GFF1140
GFF1141 - Membrane-fusion protein, at 456,600 to 457,586
GFF1141
GFF1142 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 457,586 to 459,019
GFF1142
GFF1143 - no description, at 459,023 to 459,760
GFF1143
GFF1144 - hypothetical protein, at 459,799 to 461,700
GFF1144
Position (kb) 457
458
459
460 Strain fitness (log2 ratio) -2
-1
0
1
2 at 456.742 kb on + strand, within GFF1141 at 456.742 kb on + strand, within GFF1141 at 456.742 kb on + strand, within GFF1141 at 456.742 kb on + strand, within GFF1141 at 456.742 kb on + strand, within GFF1141 at 456.742 kb on + strand, within GFF1141 at 456.742 kb on + strand, within GFF1141 at 456.742 kb on + strand, within GFF1141 at 456.743 kb on - strand, within GFF1141 at 456.743 kb on - strand, within GFF1141 at 456.743 kb on - strand, within GFF1141 at 456.743 kb on - strand, within GFF1141 at 456.743 kb on - strand, within GFF1141 at 456.743 kb on - strand, within GFF1141 at 456.743 kb on - strand, within GFF1141 at 456.745 kb on + strand, within GFF1141 at 456.745 kb on + strand, within GFF1141 at 456.745 kb on + strand, within GFF1141 at 456.745 kb on + strand, within GFF1141 at 456.745 kb on + strand, within GFF1141 at 456.746 kb on - strand, within GFF1141 at 456.746 kb on - strand, within GFF1141 at 456.746 kb on - strand, within GFF1141 at 456.746 kb on - strand, within GFF1141 at 456.746 kb on - strand, within GFF1141 at 457.078 kb on + strand, within GFF1141 at 457.078 kb on + strand, within GFF1141 at 457.078 kb on + strand, within GFF1141 at 457.078 kb on + strand, within GFF1141 at 457.078 kb on + strand, within GFF1141 at 457.078 kb on + strand, within GFF1141 at 457.079 kb on - strand, within GFF1141 at 457.079 kb on - strand, within GFF1141 at 457.079 kb on - strand, within GFF1141 at 457.079 kb on - strand, within GFF1141 at 457.617 kb on + strand at 457.617 kb on + strand at 457.617 kb on + strand at 457.617 kb on + strand at 457.617 kb on + strand at 457.618 kb on - strand at 457.618 kb on - strand at 457.618 kb on - strand at 457.677 kb on + strand at 457.677 kb on + strand at 457.677 kb on + strand at 457.678 kb on - strand at 457.678 kb on - strand at 457.678 kb on - strand at 457.678 kb on - strand at 457.678 kb on - strand at 457.678 kb on - strand at 457.833 kb on + strand, within GFF1142 at 457.834 kb on - strand, within GFF1142 at 457.977 kb on + strand, within GFF1142 at 457.977 kb on + strand, within GFF1142 at 457.977 kb on + strand, within GFF1142 at 457.977 kb on + strand, within GFF1142 at 457.978 kb on - strand, within GFF1142 at 457.978 kb on - strand, within GFF1142 at 457.978 kb on - strand, within GFF1142 at 457.978 kb on - strand, within GFF1142 at 458.166 kb on + strand, within GFF1142 at 458.166 kb on + strand, within GFF1142 at 458.167 kb on - strand, within GFF1142 at 458.313 kb on + strand, within GFF1142 at 458.313 kb on + strand, within GFF1142 at 458.314 kb on - strand, within GFF1142 at 458.314 kb on - strand, within GFF1142 at 458.314 kb on - strand, within GFF1142 at 458.457 kb on + strand, within GFF1142 at 458.457 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.631 kb on + strand, within GFF1142 at 458.631 kb on + strand, within GFF1142 at 458.631 kb on + strand, within GFF1142 at 458.631 kb on + strand, within GFF1142 at 458.631 kb on + strand, within GFF1142 at 458.632 kb on - strand, within GFF1142 at 458.632 kb on - strand, within GFF1142 at 458.632 kb on - strand, within GFF1142 at 458.632 kb on - strand, within GFF1142 at 458.632 kb on - strand, within GFF1142 at 458.632 kb on - strand, within GFF1142 at 458.632 kb on - strand, within GFF1142 at 458.757 kb on + strand, within GFF1142 at 458.757 kb on + strand, within GFF1142 at 458.757 kb on + strand, within GFF1142 at 458.757 kb on + strand, within GFF1142 at 458.757 kb on + strand, within GFF1142 at 458.757 kb on + strand, within GFF1142 at 458.757 kb on + strand, within GFF1142 at 458.757 kb on + strand, within GFF1142 at 458.757 kb on + strand, within GFF1142 at 458.757 kb on + strand, within GFF1142 at 458.758 kb on - strand, within GFF1142 at 458.758 kb on - strand, within GFF1142 at 458.758 kb on - strand, within GFF1142 at 458.758 kb on - strand, within GFF1142 at 458.758 kb on - strand, within GFF1142 at 458.763 kb on + strand, within GFF1142 at 458.763 kb on + strand, within GFF1142 at 458.763 kb on + strand, within GFF1142 at 458.763 kb on + strand, within GFF1142 at 458.763 kb on + strand, within GFF1142 at 458.763 kb on + strand, within GFF1142 at 458.763 kb on + strand, within GFF1142 at 458.763 kb on + strand, within GFF1142 at 458.763 kb on + strand, within GFF1142 at 458.763 kb on + strand, within GFF1142 at 458.764 kb on - strand, within GFF1142 at 458.764 kb on - strand, within GFF1142 at 458.764 kb on - strand, within GFF1142 at 458.764 kb on - strand, within GFF1142 at 459.304 kb on + strand, within GFF1143 at 459.305 kb on - strand, within GFF1143 at 459.305 kb on - strand, within GFF1143 at 459.305 kb on - strand, within GFF1143 at 459.305 kb on - strand, within GFF1143 at 459.597 kb on + strand, within GFF1143 at 459.597 kb on + strand, within GFF1143 at 459.597 kb on + strand, within GFF1143 at 459.598 kb on - strand, within GFF1143 at 459.598 kb on - strand, within GFF1143 at 459.598 kb on - strand, within GFF1143 at 459.598 kb on - strand, within GFF1143 at 459.651 kb on + strand, within GFF1143 at 459.651 kb on + strand, within GFF1143 at 459.651 kb on + strand, within GFF1143 at 459.651 kb on + strand, within GFF1143 at 459.651 kb on + strand, within GFF1143 at 459.651 kb on + strand, within GFF1143 at 459.651 kb on + strand, within GFF1143 at 459.652 kb on - strand, within GFF1143 at 459.652 kb on - strand, within GFF1143 at 459.652 kb on - strand, within GFF1143 at 459.772 kb on + strand at 459.772 kb on + strand at 459.772 kb on + strand at 459.772 kb on + strand at 459.772 kb on + strand at 459.772 kb on + strand at 459.772 kb on + strand at 459.772 kb on + strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.777 kb on + strand at 459.777 kb on + strand at 459.778 kb on - strand at 459.778 kb on - strand at 459.778 kb on - strand at 459.778 kb on - strand at 459.821 kb on + strand at 459.821 kb on + strand at 459.821 kb on + strand at 459.822 kb on - strand at 459.822 kb on - strand at 459.822 kb on - strand at 459.822 kb on - strand at 459.822 kb on - strand at 459.822 kb on - strand at 459.835 kb on + strand at 459.835 kb on + strand at 459.835 kb on + strand at 459.835 kb on + strand at 459.835 kb on + strand at 459.836 kb on - strand at 459.836 kb on - strand at 459.836 kb on - strand at 459.836 kb on - strand at 459.836 kb on - strand at 459.836 kb on - strand at 459.836 kb on - strand at 459.961 kb on + strand at 459.961 kb on + strand at 459.961 kb on + strand at 459.962 kb on - strand at 459.962 kb on - strand at 459.962 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 456,742 + GFF1141 0.14 -0.6 456,742 + GFF1141 0.14 -0.3 456,742 + GFF1141 0.14 -1.9 456,742 + GFF1141 0.14 -1.0 456,742 + GFF1141 0.14 +0.5 456,742 + GFF1141 0.14 -0.5 456,742 + GFF1141 0.14 -0.8 456,742 + GFF1141 0.14 -0.6 456,743 - GFF1141 0.14 -0.1 456,743 - GFF1141 0.14 -0.5 456,743 - GFF1141 0.14 -0.3 456,743 - GFF1141 0.14 -0.8 456,743 - GFF1141 0.14 -1.5 456,743 - GFF1141 0.14 -1.5 456,743 - GFF1141 0.14 -0.9 456,745 + GFF1141 0.15 -0.5 456,745 + GFF1141 0.15 +0.1 456,745 + GFF1141 0.15 -0.9 456,745 + GFF1141 0.15 +0.4 456,745 + GFF1141 0.15 -0.8 456,746 - GFF1141 0.15 -0.4 456,746 - GFF1141 0.15 -0.0 456,746 - GFF1141 0.15 -1.5 456,746 - GFF1141 0.15 -0.6 456,746 - GFF1141 0.15 +1.1 457,078 + GFF1141 0.48 +1.1 457,078 + GFF1141 0.48 +0.3 457,078 + GFF1141 0.48 -0.5 457,078 + GFF1141 0.48 +0.5 457,078 + GFF1141 0.48 -0.4 457,078 + GFF1141 0.48 -0.1 457,079 - GFF1141 0.49 +0.1 457,079 - GFF1141 0.49 -0.7 457,079 - GFF1141 0.49 +0.6 457,079 - GFF1141 0.49 +0.3 457,617 + -0.2 457,617 + -0.1 457,617 + -0.7 457,617 + +0.2 457,617 + -1.5 457,618 - +0.1 457,618 - +0.7 457,618 - +1.0 457,677 + -0.8 457,677 + -0.5 457,677 + -0.6 457,678 - -0.0 457,678 - +0.1 457,678 - -0.5 457,678 - +0.8 457,678 - +0.0 457,678 - -1.0 457,833 + GFF1142 0.17 -0.2 457,834 - GFF1142 0.17 +0.5 457,977 + GFF1142 0.27 +1.3 457,977 + GFF1142 0.27 -1.3 457,977 + GFF1142 0.27 -0.0 457,977 + GFF1142 0.27 -1.5 457,978 - GFF1142 0.27 -0.5 457,978 - GFF1142 0.27 -1.3 457,978 - GFF1142 0.27 -1.0 457,978 - GFF1142 0.27 -0.3 458,166 + GFF1142 0.40 -1.4 458,166 + GFF1142 0.40 -1.3 458,167 - GFF1142 0.41 -0.8 458,313 + GFF1142 0.51 -0.4 458,313 + GFF1142 0.51 -0.7 458,314 - GFF1142 0.51 -0.7 458,314 - GFF1142 0.51 +0.2 458,314 - GFF1142 0.51 -0.0 458,457 + GFF1142 0.61 -0.6 458,457 + GFF1142 0.61 -0.1 458,571 + GFF1142 0.69 +0.1 458,571 + GFF1142 0.69 +0.0 458,571 + GFF1142 0.69 -0.1 458,571 + GFF1142 0.69 -0.8 458,571 + GFF1142 0.69 -1.9 458,571 + GFF1142 0.69 +0.9 458,571 + GFF1142 0.69 -0.4 458,571 + GFF1142 0.69 +0.6 458,571 + GFF1142 0.69 +0.8 458,572 - GFF1142 0.69 -0.6 458,572 - GFF1142 0.69 -0.1 458,572 - GFF1142 0.69 -1.5 458,572 - GFF1142 0.69 -0.1 458,572 - GFF1142 0.69 +0.2 458,572 - GFF1142 0.69 -0.6 458,572 - GFF1142 0.69 -0.9 458,572 - GFF1142 0.69 -1.7 458,572 - GFF1142 0.69 +1.1 458,572 - GFF1142 0.69 -0.5 458,572 - GFF1142 0.69 -0.6 458,572 - GFF1142 0.69 -1.1 458,572 - GFF1142 0.69 -0.2 458,631 + GFF1142 0.73 -0.8 458,631 + GFF1142 0.73 -0.7 458,631 + GFF1142 0.73 -0.5 458,631 + GFF1142 0.73 -0.5 458,631 + GFF1142 0.73 -1.5 458,632 - GFF1142 0.73 +0.0 458,632 - GFF1142 0.73 +0.1 458,632 - GFF1142 0.73 -0.2 458,632 - GFF1142 0.73 -0.2 458,632 - GFF1142 0.73 +0.2 458,632 - GFF1142 0.73 +0.2 458,632 - GFF1142 0.73 -1.9 458,757 + GFF1142 0.82 -0.5 458,757 + GFF1142 0.82 -0.4 458,757 + GFF1142 0.82 +1.3 458,757 + GFF1142 0.82 -0.3 458,757 + GFF1142 0.82 -0.4 458,757 + GFF1142 0.82 +0.5 458,757 + GFF1142 0.82 +0.2 458,757 + GFF1142 0.82 -0.4 458,757 + GFF1142 0.82 +0.3 458,757 + GFF1142 0.82 -0.8 458,758 - GFF1142 0.82 -1.0 458,758 - GFF1142 0.82 -0.0 458,758 - GFF1142 0.82 -0.8 458,758 - GFF1142 0.82 -0.5 458,758 - GFF1142 0.82 +0.0 458,763 + GFF1142 0.82 -0.3 458,763 + GFF1142 0.82 -2.2 458,763 + GFF1142 0.82 +0.7 458,763 + GFF1142 0.82 +1.1 458,763 + GFF1142 0.82 -0.5 458,763 + GFF1142 0.82 -1.0 458,763 + GFF1142 0.82 -0.5 458,763 + GFF1142 0.82 +0.5 458,763 + GFF1142 0.82 -0.6 458,763 + GFF1142 0.82 -0.2 458,764 - GFF1142 0.82 -0.9 458,764 - GFF1142 0.82 -0.2 458,764 - GFF1142 0.82 -0.2 458,764 - GFF1142 0.82 +0.0 459,304 + GFF1143 0.38 +0.2 459,305 - GFF1143 0.38 -0.9 459,305 - GFF1143 0.38 +1.8 459,305 - GFF1143 0.38 +0.7 459,305 - GFF1143 0.38 -0.5 459,597 + GFF1143 0.78 +0.4 459,597 + GFF1143 0.78 -0.0 459,597 + GFF1143 0.78 -0.5 459,598 - GFF1143 0.78 +0.7 459,598 - GFF1143 0.78 -1.3 459,598 - GFF1143 0.78 +1.2 459,598 - GFF1143 0.78 +0.0 459,651 + GFF1143 0.85 -0.0 459,651 + GFF1143 0.85 -0.3 459,651 + GFF1143 0.85 -0.6 459,651 + GFF1143 0.85 -0.2 459,651 + GFF1143 0.85 +0.7 459,651 + GFF1143 0.85 -0.0 459,651 + GFF1143 0.85 -0.4 459,652 - GFF1143 0.85 -0.0 459,652 - GFF1143 0.85 -2.4 459,652 - GFF1143 0.85 +0.2 459,772 + +1.3 459,772 + +1.8 459,772 + +0.6 459,772 + -0.2 459,772 + -1.9 459,772 + -0.2 459,772 + +1.1 459,772 + +2.5 459,773 - -0.5 459,773 - +0.3 459,773 - +0.5 459,773 - +0.7 459,773 - -1.0 459,773 - -0.0 459,773 - -0.7 459,773 - -0.5 459,773 - -0.4 459,773 - +0.2 459,777 + +0.3 459,777 + +0.5 459,778 - +0.4 459,778 - -0.3 459,778 - -0.1 459,778 - -0.0 459,821 + +0.0 459,821 + -0.5 459,821 + +0.2 459,822 - +0.2 459,822 - -0.1 459,822 - +0.1 459,822 - +0.3 459,822 - -0.2 459,822 - -0.6 459,835 + -1.5 459,835 + -0.1 459,835 + -1.0 459,835 + +0.2 459,835 + +1.2 459,836 - -0.1 459,836 - -1.0 459,836 - -0.6 459,836 - -0.8 459,836 - -0.6 459,836 - -1.8 459,836 - -1.3 459,961 + +1.2 459,961 + +0.7 459,961 + -2.1 459,962 - -0.8 459,962 - -0.2 459,962 - -1.5
Or see this region's nucleotide sequence