Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1066 and GFF1067 are separated by 11 nucleotides GFF1067 and GFF1068 are separated by 2 nucleotides
GFF1066 - Aspartate aminotransferase (EC 2.6.1.1), at 379,043 to 380,218
GFF1066
GFF1067 - Hydrolase, alpha/beta fold family, at 380,230 to 381,111
GFF1067
GFF1068 - Beta-ureidopropionase (EC 3.5.1.6), at 381,114 to 382,403
GFF1068
Position (kb) 380
381
382 Strain fitness (log2 ratio) -1
0
1 at 379.238 kb on + strand, within GFF1066 at 379.239 kb on - strand, within GFF1066 at 379.239 kb on - strand, within GFF1066 at 379.239 kb on - strand, within GFF1066 at 379.239 kb on - strand, within GFF1066 at 379.538 kb on + strand, within GFF1066 at 379.538 kb on + strand, within GFF1066 at 379.538 kb on + strand, within GFF1066 at 379.539 kb on - strand, within GFF1066 at 379.539 kb on - strand, within GFF1066 at 379.571 kb on - strand, within GFF1066 at 379.574 kb on + strand, within GFF1066 at 379.574 kb on + strand, within GFF1066 at 379.574 kb on + strand, within GFF1066 at 379.575 kb on - strand, within GFF1066 at 379.575 kb on - strand, within GFF1066 at 379.575 kb on - strand, within GFF1066 at 379.649 kb on + strand, within GFF1066 at 379.650 kb on - strand, within GFF1066 at 379.795 kb on - strand, within GFF1066 at 379.795 kb on - strand, within GFF1066 at 380.078 kb on + strand, within GFF1066 at 380.078 kb on + strand, within GFF1066 at 380.078 kb on + strand, within GFF1066 at 380.266 kb on + strand at 380.267 kb on - strand at 380.269 kb on + strand at 380.269 kb on + strand at 380.597 kb on - strand, within GFF1067 at 380.913 kb on - strand, within GFF1067 at 380.913 kb on - strand, within GFF1067 at 381.144 kb on - strand at 381.144 kb on - strand at 381.144 kb on - strand at 381.144 kb on - strand at 381.265 kb on + strand, within GFF1068 at 381.266 kb on - strand, within GFF1068 at 381.340 kb on + strand, within GFF1068 at 381.341 kb on - strand, within GFF1068 at 381.436 kb on + strand, within GFF1068 at 381.715 kb on - strand, within GFF1068 at 381.728 kb on + strand, within GFF1068 at 381.859 kb on - strand, within GFF1068
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 379,238 + GFF1066 0.17 +0.7 379,239 - GFF1066 0.17 -0.5 379,239 - GFF1066 0.17 +0.5 379,239 - GFF1066 0.17 +0.8 379,239 - GFF1066 0.17 -1.5 379,538 + GFF1066 0.42 -1.4 379,538 + GFF1066 0.42 +0.1 379,538 + GFF1066 0.42 -0.7 379,539 - GFF1066 0.42 +0.3 379,539 - GFF1066 0.42 -0.5 379,571 - GFF1066 0.45 +0.7 379,574 + GFF1066 0.45 -0.3 379,574 + GFF1066 0.45 -0.8 379,574 + GFF1066 0.45 +0.5 379,575 - GFF1066 0.45 -0.8 379,575 - GFF1066 0.45 +1.5 379,575 - GFF1066 0.45 -0.4 379,649 + GFF1066 0.52 -0.7 379,650 - GFF1066 0.52 -0.2 379,795 - GFF1066 0.64 -0.6 379,795 - GFF1066 0.64 -0.1 380,078 + GFF1066 0.88 -0.7 380,078 + GFF1066 0.88 -0.1 380,078 + GFF1066 0.88 +0.2 380,266 + +0.5 380,267 - -0.4 380,269 + +0.3 380,269 + -0.1 380,597 - GFF1067 0.42 +1.5 380,913 - GFF1067 0.77 -1.4 380,913 - GFF1067 0.77 -0.5 381,144 - -0.9 381,144 - -0.5 381,144 - -1.1 381,144 - -1.3 381,265 + GFF1068 0.12 -1.6 381,266 - GFF1068 0.12 -0.4 381,340 + GFF1068 0.18 -0.5 381,341 - GFF1068 0.18 -0.1 381,436 + GFF1068 0.25 -0.1 381,715 - GFF1068 0.47 -0.5 381,728 + GFF1068 0.48 -0.6 381,859 - GFF1068 0.58 -0.3
Or see this region's nucleotide sequence