Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF872 and GFF873 overlap by 4 nucleotides GFF873 and GFF874 overlap by 4 nucleotides GFF874 and GFF875 are separated by 174 nucleotides GFF875 and GFF876 are separated by 104 nucleotides
GFF872 - Hemin ABC transporter, permease protein, at 181,428 to 182,420
GFF872
GFF873 - KEGG: iron complex transport system ATP-binding protein , at 182,417 to 183,151
GFF873
GFF874 - no description, at 183,148 to 184,188
GFF874
GFF875 - no description, at 184,363 to 184,743
GFF875
GFF876 - hypothetical protein, at 184,848 to 186,509
GFF876
Position (kb) 183
184
185 Strain fitness (log2 ratio) -2
-1
0
1
2 at 182.446 kb on - strand at 182.446 kb on - strand at 182.446 kb on - strand at 182.664 kb on - strand, within GFF873 at 183.084 kb on - strand at 183.084 kb on - strand at 183.317 kb on - strand, within GFF874 at 183.673 kb on + strand, within GFF874 at 183.674 kb on - strand, within GFF874 at 183.674 kb on - strand, within GFF874 at 183.850 kb on + strand, within GFF874 at 183.850 kb on + strand, within GFF874 at 183.851 kb on - strand, within GFF874 at 183.851 kb on - strand, within GFF874 at 183.917 kb on - strand, within GFF874 at 184.439 kb on - strand, within GFF875 at 184.439 kb on - strand, within GFF875 at 184.439 kb on - strand, within GFF875 at 184.525 kb on + strand, within GFF875 at 184.526 kb on - strand, within GFF875 at 184.741 kb on + strand at 184.927 kb on + strand at 185.075 kb on - strand, within GFF876 at 185.075 kb on - strand, within GFF876 at 185.185 kb on + strand, within GFF876 at 185.185 kb on + strand, within GFF876 at 185.185 kb on + strand, within GFF876 at 185.185 kb on + strand, within GFF876 at 185.185 kb on + strand, within GFF876 at 185.185 kb on + strand, within GFF876 at 185.186 kb on - strand, within GFF876 at 185.186 kb on - strand, within GFF876 at 185.186 kb on - strand, within GFF876 at 185.186 kb on - strand, within GFF876 at 185.186 kb on - strand, within GFF876
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 182,446 - -0.7 182,446 - +1.9 182,446 - -0.7 182,664 - GFF873 0.34 -0.5 183,084 - -1.8 183,084 - +0.1 183,317 - GFF874 0.16 +0.4 183,673 + GFF874 0.50 +0.5 183,674 - GFF874 0.51 -0.2 183,674 - GFF874 0.51 +0.3 183,850 + GFF874 0.67 -0.1 183,850 + GFF874 0.67 -0.4 183,851 - GFF874 0.68 -0.5 183,851 - GFF874 0.68 -0.1 183,917 - GFF874 0.74 +0.9 184,439 - GFF875 0.20 -0.3 184,439 - GFF875 0.20 -0.2 184,439 - GFF875 0.20 +0.0 184,525 + GFF875 0.43 -0.8 184,526 - GFF875 0.43 +0.4 184,741 + +0.8 184,927 + -0.8 185,075 - GFF876 0.14 +0.5 185,075 - GFF876 0.14 -0.7 185,185 + GFF876 0.20 -0.1 185,185 + GFF876 0.20 -0.4 185,185 + GFF876 0.20 -2.0 185,185 + GFF876 0.20 -0.5 185,185 + GFF876 0.20 +0.1 185,185 + GFF876 0.20 -0.4 185,186 - GFF876 0.20 -0.3 185,186 - GFF876 0.20 -0.5 185,186 - GFF876 0.20 -0.3 185,186 - GFF876 0.20 +2.3 185,186 - GFF876 0.20 -1.1
Or see this region's nucleotide sequence