Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF833 and GFF834 are separated by 13 nucleotides GFF834 and GFF835 are separated by 6 nucleotides GFF835 and GFF836 overlap by 4 nucleotides GFF836 and GFF837 are separated by 34 nucleotides
GFF833 - Proteins containing SET domain, at 138,973 to 139,461
GFF833
GFF834 - hypothetical protein, at 139,475 to 140,344
GFF834
GFF835 - Two-component system sensor histidine kinase, at 140,351 to 141,631
GFF835
GFF836 - Vitamin B12 ABC transporter, substrate-binding protein BtuF, at 141,628 to 142,569
GFF836
GFF837 - FIG01002808: hypothetical protein, at 142,604 to 143,455
GFF837
Position (kb) 140
141
142 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 139.725 kb on + strand, within GFF834 at 139.726 kb on - strand, within GFF834 at 139.751 kb on + strand, within GFF834 at 139.751 kb on + strand, within GFF834 at 140.110 kb on - strand, within GFF834 at 140.253 kb on + strand, within GFF834 at 140.253 kb on + strand, within GFF834 at 140.253 kb on + strand, within GFF834 at 140.254 kb on - strand, within GFF834 at 140.263 kb on - strand at 140.417 kb on - strand at 140.451 kb on + strand at 140.451 kb on + strand at 140.451 kb on + strand at 140.451 kb on + strand at 140.451 kb on + strand at 140.451 kb on + strand at 140.451 kb on + strand at 140.451 kb on + strand at 140.451 kb on + strand at 140.451 kb on + strand at 140.452 kb on - strand at 140.452 kb on - strand at 140.452 kb on - strand at 140.452 kb on - strand at 140.452 kb on - strand at 140.452 kb on - strand at 140.452 kb on - strand at 140.452 kb on - strand at 140.452 kb on - strand at 140.452 kb on - strand at 140.452 kb on - strand at 140.452 kb on - strand at 140.503 kb on - strand, within GFF835 at 140.843 kb on + strand, within GFF835 at 140.843 kb on + strand, within GFF835 at 140.844 kb on - strand, within GFF835 at 140.844 kb on - strand, within GFF835 at 140.844 kb on - strand, within GFF835 at 140.844 kb on - strand, within GFF835 at 141.180 kb on + strand, within GFF835 at 141.181 kb on - strand, within GFF835 at 141.181 kb on - strand, within GFF835 at 141.214 kb on + strand, within GFF835 at 141.214 kb on + strand, within GFF835 at 141.214 kb on + strand, within GFF835 at 141.214 kb on + strand, within GFF835 at 141.215 kb on - strand, within GFF835 at 141.215 kb on - strand, within GFF835 at 141.215 kb on - strand, within GFF835 at 141.215 kb on - strand, within GFF835 at 141.215 kb on - strand, within GFF835 at 141.215 kb on - strand, within GFF835 at 141.215 kb on - strand, within GFF835 at 141.215 kb on - strand, within GFF835 at 141.215 kb on - strand, within GFF835 at 141.215 kb on - strand, within GFF835 at 141.216 kb on + strand, within GFF835 at 141.216 kb on + strand, within GFF835 at 141.216 kb on + strand, within GFF835 at 141.216 kb on + strand, within GFF835 at 141.216 kb on + strand, within GFF835 at 141.216 kb on + strand, within GFF835 at 141.216 kb on + strand, within GFF835 at 141.216 kb on + strand, within GFF835 at 141.216 kb on + strand, within GFF835 at 141.216 kb on + strand, within GFF835 at 141.216 kb on + strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.217 kb on - strand, within GFF835 at 141.231 kb on + strand, within GFF835 at 141.231 kb on + strand, within GFF835 at 141.231 kb on + strand, within GFF835 at 141.231 kb on + strand, within GFF835 at 141.231 kb on + strand, within GFF835 at 141.232 kb on - strand, within GFF835 at 141.258 kb on + strand, within GFF835 at 141.258 kb on + strand, within GFF835 at 141.258 kb on + strand, within GFF835 at 141.503 kb on + strand, within GFF835 at 141.503 kb on + strand, within GFF835 at 141.504 kb on - strand at 141.504 kb on - strand at 141.504 kb on - strand at 141.594 kb on + strand at 141.594 kb on + strand at 141.594 kb on + strand at 141.594 kb on + strand at 141.594 kb on + strand at 141.595 kb on - strand at 141.595 kb on - strand at 141.595 kb on - strand at 141.595 kb on - strand at 141.595 kb on - strand at 141.595 kb on - strand at 141.595 kb on - strand at 141.983 kb on + strand, within GFF836 at 141.984 kb on - strand, within GFF836 at 142.605 kb on + strand at 142.605 kb on + strand at 142.605 kb on + strand at 142.606 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 139,725 + GFF834 0.29 -0.5 139,726 - GFF834 0.29 +0.0 139,751 + GFF834 0.32 +1.1 139,751 + GFF834 0.32 -0.2 140,110 - GFF834 0.73 -0.2 140,253 + GFF834 0.89 +0.0 140,253 + GFF834 0.89 -0.9 140,253 + GFF834 0.89 +0.0 140,254 - GFF834 0.90 -0.2 140,263 - -1.2 140,417 - +0.1 140,451 + +1.1 140,451 + -1.7 140,451 + +0.3 140,451 + -0.6 140,451 + -0.7 140,451 + +0.5 140,451 + -0.4 140,451 + +0.3 140,451 + -0.9 140,451 + +0.3 140,452 - -2.1 140,452 - -2.0 140,452 - -1.1 140,452 - +0.2 140,452 - -0.4 140,452 - -0.4 140,452 - -0.8 140,452 - -0.3 140,452 - -0.2 140,452 - -0.0 140,452 - +0.2 140,452 - +1.5 140,503 - GFF835 0.12 -2.0 140,843 + GFF835 0.38 -0.2 140,843 + GFF835 0.38 +1.5 140,844 - GFF835 0.38 -0.5 140,844 - GFF835 0.38 -0.2 140,844 - GFF835 0.38 -1.5 140,844 - GFF835 0.38 -0.8 141,180 + GFF835 0.65 +0.9 141,181 - GFF835 0.65 -1.7 141,181 - GFF835 0.65 +0.3 141,214 + GFF835 0.67 -2.2 141,214 + GFF835 0.67 -2.3 141,214 + GFF835 0.67 -0.4 141,214 + GFF835 0.67 -1.6 141,215 - GFF835 0.67 -0.1 141,215 - GFF835 0.67 +3.1 141,215 - GFF835 0.67 -0.6 141,215 - GFF835 0.67 -0.5 141,215 - GFF835 0.67 -1.0 141,215 - GFF835 0.67 +1.3 141,215 - GFF835 0.67 -0.2 141,215 - GFF835 0.67 -0.4 141,215 - GFF835 0.67 -1.2 141,215 - GFF835 0.67 +0.3 141,216 + GFF835 0.68 +0.9 141,216 + GFF835 0.68 -0.3 141,216 + GFF835 0.68 -1.1 141,216 + GFF835 0.68 -1.2 141,216 + GFF835 0.68 -0.1 141,216 + GFF835 0.68 -0.0 141,216 + GFF835 0.68 +0.3 141,216 + GFF835 0.68 -0.2 141,216 + GFF835 0.68 -1.1 141,216 + GFF835 0.68 -0.4 141,216 + GFF835 0.68 +0.4 141,217 - GFF835 0.68 -0.0 141,217 - GFF835 0.68 -0.7 141,217 - GFF835 0.68 +0.5 141,217 - GFF835 0.68 +0.5 141,217 - GFF835 0.68 -0.7 141,217 - GFF835 0.68 -0.4 141,217 - GFF835 0.68 -1.1 141,217 - GFF835 0.68 -0.1 141,217 - GFF835 0.68 -0.8 141,217 - GFF835 0.68 +0.5 141,217 - GFF835 0.68 -0.3 141,217 - GFF835 0.68 -0.7 141,217 - GFF835 0.68 +0.5 141,217 - GFF835 0.68 -1.3 141,217 - GFF835 0.68 -0.5 141,217 - GFF835 0.68 -0.6 141,217 - GFF835 0.68 +0.3 141,217 - GFF835 0.68 -0.0 141,231 + GFF835 0.69 -0.8 141,231 + GFF835 0.69 -1.5 141,231 + GFF835 0.69 -0.2 141,231 + GFF835 0.69 -0.7 141,231 + GFF835 0.69 -0.9 141,232 - GFF835 0.69 -1.1 141,258 + GFF835 0.71 -0.0 141,258 + GFF835 0.71 -0.7 141,258 + GFF835 0.71 -0.4 141,503 + GFF835 0.90 -0.6 141,503 + GFF835 0.90 +0.2 141,504 - +2.0 141,504 - -1.3 141,504 - -0.1 141,594 + +0.8 141,594 + -1.3 141,594 + -0.6 141,594 + -0.2 141,594 + -0.7 141,595 - -0.8 141,595 - +2.1 141,595 - -0.5 141,595 - -0.7 141,595 - +0.3 141,595 - -0.3 141,595 - -0.6 141,983 + GFF836 0.38 -0.3 141,984 - GFF836 0.38 -0.7 142,605 + -1.1 142,605 + +0.4 142,605 + +0.2 142,606 - -0.6
Or see this region's nucleotide sequence