Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7272 and GFF7273 are separated by 367 nucleotides GFF7273 and GFF7274 overlap by 4 nucleotides
GFF7272 - D-glucarate permease, at 20,907 to 22,256
GFF7272
GFF7273 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 22,624 to 23,481
GFF7273
GFF7274 - hypothetical protein, at 23,478 to 24,575
GFF7274
Position (kb) 22
23
24 Strain fitness (log2 ratio) -2
-1
0
1 at 21.703 kb on + strand, within GFF7272 at 21.704 kb on - strand, within GFF7272 at 21.818 kb on - strand, within GFF7272 at 21.818 kb on - strand, within GFF7272 at 22.087 kb on + strand, within GFF7272 at 22.087 kb on + strand, within GFF7272 at 22.088 kb on - strand, within GFF7272 at 22.250 kb on + strand at 22.250 kb on + strand at 22.251 kb on - strand at 22.449 kb on - strand at 22.659 kb on - strand at 22.939 kb on + strand, within GFF7273 at 22.940 kb on - strand, within GFF7273 at 23.080 kb on + strand, within GFF7273 at 23.081 kb on - strand, within GFF7273 at 23.081 kb on - strand, within GFF7273 at 23.081 kb on - strand, within GFF7273 at 23.266 kb on + strand, within GFF7273 at 23.285 kb on - strand, within GFF7273 at 23.296 kb on + strand, within GFF7273 at 23.457 kb on + strand at 23.873 kb on - strand, within GFF7274 at 24.223 kb on - strand, within GFF7274 at 24.410 kb on - strand, within GFF7274 at 24.436 kb on + strand, within GFF7274 at 24.437 kb on - strand, within GFF7274 at 24.438 kb on + strand, within GFF7274 at 24.438 kb on + strand, within GFF7274 at 24.439 kb on - strand, within GFF7274
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 21,703 + GFF7272 0.59 +0.7 21,704 - GFF7272 0.59 +0.4 21,818 - GFF7272 0.67 +0.9 21,818 - GFF7272 0.67 -0.3 22,087 + GFF7272 0.87 -0.4 22,087 + GFF7272 0.87 -0.1 22,088 - GFF7272 0.87 -1.1 22,250 + -0.1 22,250 + -1.3 22,251 - -1.2 22,449 - -0.3 22,659 - -0.0 22,939 + GFF7273 0.37 +1.0 22,940 - GFF7273 0.37 -0.8 23,080 + GFF7273 0.53 -0.8 23,081 - GFF7273 0.53 -0.4 23,081 - GFF7273 0.53 +0.2 23,081 - GFF7273 0.53 -0.5 23,266 + GFF7273 0.75 -0.8 23,285 - GFF7273 0.77 -1.5 23,296 + GFF7273 0.78 -0.4 23,457 + +0.4 23,873 - GFF7274 0.36 -0.6 24,223 - GFF7274 0.68 +0.3 24,410 - GFF7274 0.85 -0.6 24,436 + GFF7274 0.87 -1.4 24,437 - GFF7274 0.87 -0.2 24,438 + GFF7274 0.87 -1.9 24,438 + GFF7274 0.87 -0.0 24,439 - GFF7274 0.88 +0.3
Or see this region's nucleotide sequence