Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7265 and GFF7266 are separated by 77 nucleotides GFF7266 and GFF7267 overlap by 4 nucleotides
GFF7265 - hypothetical protein, not 6-phosphogluconolactonase, at 12,192 to 13,304
GFF7265
GFF7266 - L-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.16), at 13,382 to 14,377
GFF7266
GFF7267 - L-talarate dehydratase @ Galactarate dehydratase (EC 4.2.1.42), at 14,374 to 15,573
GFF7267
Position (kb) 13
14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 12.513 kb on + strand, within GFF7265 at 12.514 kb on - strand, within GFF7265 at 12.540 kb on + strand, within GFF7265 at 12.540 kb on + strand, within GFF7265 at 12.688 kb on - strand, within GFF7265 at 12.837 kb on + strand, within GFF7265 at 12.838 kb on - strand, within GFF7265 at 12.943 kb on - strand, within GFF7265 at 13.229 kb on + strand at 13.323 kb on - strand at 13.995 kb on + strand, within GFF7266 at 14.134 kb on - strand, within GFF7266 at 15.077 kb on + strand, within GFF7267 at 15.078 kb on - strand, within GFF7267 at 15.078 kb on - strand, within GFF7267 at 15.302 kb on + strand, within GFF7267 at 15.303 kb on - strand, within GFF7267 at 15.303 kb on - strand, within GFF7267 at 15.303 kb on - strand, within GFF7267
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 12,513 + GFF7265 0.29 -0.6 12,514 - GFF7265 0.29 -0.6 12,540 + GFF7265 0.31 -0.2 12,540 + GFF7265 0.31 -0.2 12,688 - GFF7265 0.45 +0.5 12,837 + GFF7265 0.58 +1.0 12,838 - GFF7265 0.58 -0.0 12,943 - GFF7265 0.67 -0.5 13,229 + -2.8 13,323 - -0.1 13,995 + GFF7266 0.62 +1.0 14,134 - GFF7266 0.76 -0.0 15,077 + GFF7267 0.59 -1.6 15,078 - GFF7267 0.59 -0.3 15,078 - GFF7267 0.59 -0.4 15,302 + GFF7267 0.77 -0.4 15,303 - GFF7267 0.77 -0.2 15,303 - GFF7267 0.77 -0.3 15,303 - GFF7267 0.77 -0.4
Or see this region's nucleotide sequence